FPbase Reference List

This is a table of all articles referenced on at least one page at FPbase. Use the search field to search for any text in the table, including protein name, author name, journal name, publication year, or title contents. 1˚ proteins are intended to be proteins that were introduced by that reference, whereas 2˚ proteins were further characterized by that reference. Click on any title, author, or protein, to see more info for that item at FPbase, or click on the "Link" button to go to the publisher's website.

Link Year Journal Title Authors 1˚ Proteins 2˚ Proteins
1992 Gene Primary structure of the Aequorea victoria green-fluorescent protein Prasher Dc, Eckenrode Vk, Ward Ww, Prendergast Fg, Cormier Mj avGFP
1994 Science Green fluorescent protein as a marker for gene expression Chalfie M, Tu Y, Euskirchen G, Ward W, Prasher D avGFP
1994 Proceedings of the National Academy of Sciences Wavelength mutations and posttranslational autoxidation of green fluorescent protein. Heim R, Prasher Dc, Tsien Ry CFP, H9, P11, P4, P9 ECFP,
1995 Nature Biotechnology Red-Shifted Excitation Mutants of the Green Fluorescent Protein Youvan Dc, Yang Mm, Silva Cm, Hawtin Re, Delagrave S RSGFP1, RSGFP2, RSGFP3, RSGFP4, RSGFP6, RSGFP7
1995 Nature Improved green fluorescence Heim R, Cubitt Ab, Tsien Ry GFP (S65T) avGFP,
1996 Gene FACS-optimized mutants of the green fluorescent protein (GFP) Cormack Bp, Valdivia Rh, Falkow S EGFP, GFPmut2, GFPmut3
1996 Gene Fluorescence resonance energy transfer between blue-emitting and red-shifted excitation derivatives of the green fluorescent protein Youvan Dc, Silva Cm, Mitra Rd BFP5
1996 Current Biology Engineering green fluorescent protein for improved brightness, longer wavelengths and fluorescence resonance energy transfer Heim R, Tsien Ry BFP, ECFP, P4-1, W2, W7 GFP (S65T),
1996 Nature Biotechnology Improved Green Fluorescent Protein by Molecular Evolution Using DNA Shuffling Crameri A, Whitehorn Ea, Tate E, Stemmer Wpc αGFP
1996 Science Crystal Structure of the Aequorea victoria Green Fluorescent Protein Orm  M, Cubitt Ab, Kallio K, Gross La, Tsien Ry, Remington Sj 10B, 11, 5B, 6C, EYFP avGFP,
1996 Nature Biotechnology The molecular structure of green fluorescent protein Yang F, Moss Lg, Phillips Gn avGFP
1996 Biochemical and Biophysical Research Communications An Enhanced Green Fluorescent Protein Allows Sensitive Detection of Gene Transfer in Mammalian Cells Kain Sr, Gurtu V, Zhang G EGFP
1996 Nucleic Acids Research Optimized Codon Usage and Chromophore Mutations Provide Enhanced Sensitivity with the Green Fluorescent Protein Yang T-T, Cheng L, Kain Sr EGFP
1997 Nature Structural & Molecular Biology The structural basis for spectral variations in green fluorescent protein Palm Gj, Zdanov A, Gaitanaris Ga, Stauber R, Pavlakis Gn, Wlodawer A sg11, sg12, sg25, sg42, sg50
1997 Biochemistry Crystal Structure and Photodynamic Behavior of the Blue Emission Variant Y66H/Y145F of Green Fluorescent Protein† Wachter Rm, King Ba, Heim R, Kallio K, Tsien Ry, Boxer Sg, Remington Sj P4
1997 Biophysical Journal Use of the green fluorescent protein and its mutants in quantitative fluorescence microscopy Patterson Gh, Knobel Sm, Sharif Wd, Kain Sr, Piston Dw αGFP, avGFP, EBFP, EGFP, GFP (S65T)
1997 Journal of Biological Chemistry Deletions of theAequorea victoriaGreen Fluorescent Protein Define the Minimal Domain Required for Fluorescence Huang C-C, Kain Sr, Zhao X, Ngo N, Zhang G, Li X avGFP
1998 Methods in Cell Biology Chapter 2: Understanding Structure—Function Relationships in the Aequorea victoria Green Fluorescent Protein Cubitt Ab, Woollenweber La, Heim R Emerald, mEmerald, P4-3E, Sapphire, Topaz ECFP, EGFP, H9, P4, W1C
1998 Journal of Biological Chemistry Improved Fluorescence and Dual Color Detection with Enhanced Blue and Green Variants of the Green Fluorescent Protein Yang T-T, Sinai P, Green G, Kitts Pa, Chen Y-T, Lybarger L, Chervenak R, Patterson Gh, Piston Dw, Kain Sr EBFP BFP5,
1998 Annual Review of Biochemistry THE GREEN FLUORESCENT PROTEIN Tsien Ry W1C avGFP, EBFP, ECFP, EGFP, mEGFP, mEmerald, P4, Topaz
1998 Structure Structural basis of spectral shifts in the yellow-emission variants of green fluorescent protein Wachter Rm, Elsliger M-A, Kallio K, Hanson Gt, Remington Sj
1998 BioTechniques Two-Color Green Fluorescent Protein Time-Lapse Imaging Presley Jf, Lippincott-Schwartz J, Ellenberg J W7
1999 Proceedings of the National Academy of Sciences Dynamic and quantitative Ca2+ measurements using improved cameleons Tsien Ry, Heim R, Griesbeck O, Miyawaki A EYFP-Q69K
1999 Nature Biotechnology Rapid protein-folding assay using green fluorescent protein Terwilliger Tc, Berendzen J, Standish Bm, Waldo Gs
1999 Nature Biotechnology Erratum: Fluorescent proteins from nonbioluminescent Anthozoa species Matz Mv, Fradkov Af, Labas Ya, Savitsky Ap, Zaraisky Ag, Markelov Ml, Lukyanov Sa amFP486, cFP484, dsFP483, DsRed, zFP538, ZsGreen
2000 Nucleic Acids Research Directed evolution of green fluorescent protein by a new versatile PCR strategy for site-directed and semi-random mutagenesis Sawano A CGFP, ECGFP
2000 Proceedings of the National Academy of Sciences Biochemistry, mutagenesis, and oligomerization of DsRed, a red fluorescent protein from coral Tsien Ry, Zacharias Da, Baird Gs DsRed
2000 Proceedings of the National Academy of Sciences The structure of the chromophore within DsRed, a red fluorescent protein from coral Tsien Ry, Baldridge Kk, Hoffman Rc, Baird Gs, Gross La DsRed
2000 Science "Fluorescent Timer": Protein That Changes Color with Time Terskikh A DsRed-Timer
2000 Nature Structural Biology The structural basis for red fluorescence in the tetrameric GFP homolog DsRed. Socolich M, Wall Ma, Ranganathan R DsRed
2000 Proceedings of the National Academy of Sciences Cracks in the beta -can: Fluorescent proteins from Anemonia sulcata (Anthozoa, Actinaria) Wiedenmann J, Elke C, Spindler K-D, Funke W asCP562, asFP499
2001 Journal of Biological Chemistry Reducing the Environmental Sensitivity of Yellow Fluorescent Protein Griesbeck O, Baird Gs, Campbell Re, Zacharias Da, Tsien Ry Citrine, cpCitrine, mCitrine
2001 FEBS Letters GFP-like chromoproteins as a source of far-red fluorescent proteins Gurskaya Ng, Fradkov Af, Terskikh A, Matz Mv, Labas Ya, Martynov Vi, Yanushevich Yg, Lukyanov Ka, Lukyanov Sa HcRed
2001 The EMBO Journal Shedding light on disulfide bond formation: engineering a redox switch in green fluorescent protein Ostergaard H avGFP523
2001 Chemical Physics Multiphoton molecular spectroscopy and excited-state dynamics of enhanced green fluorescent protein (EGFP): acid–base specificity Heikal Aa, Hess St, Webb Ww EGFP
2001 FEBS Letters Aequoreagreen fluorescent protein Inouye S, Tsuji Fi avGFP
2002 Nature Biotechnology Rapidly maturing variants of the Discosoma red fluorescent protein (DsRed) Bevis Bj, Glick Bs DsRed2, DsRed-Express, DsRed.T3, DsRed.T4 DsRed,
2002 Nature Biotechnology A variant of yellow fluorescent protein with fast and efficient maturation for cell-biological applications Nagai T, Ibata K, Park Es, Kubota M, Mikoshiba K, Miyawaki A EYFP-F46L, SEYFP, Venus
2002 Comparative Biochemistry and Physiology Part B: Biochemistry and Molecular Biology Separation of highly fluorescent proteins by SDS-PAGE in Acroporidae corals Papina M, Sakihama Y, Bena C, Van Woesik R, Yamasaki H atenFP
2002 Proceedings of the National Academy of Sciences Diversity and evolution of the green fluorescent protein family Labas Ya, Gurskaya Ng, Yanushevich Yg, Fradkov Af, Lukyanov Ka, Lukyanov Sa, Matz Mv asulCP, cgigCP, cgigGFP, cpasCP, dendFP, dis2RFP, dis3GFP, gtenCP, hcriCP, hcriGFP, mcavGFP, mcavRFP, ptilGFP, rfloGFP, rfloRFP, scubGFP1, scubGFP2, zoan2RFP amFP486, cFP484, DsRed, zFP538, ZsGreen
2002 Science Partitioning of Lipid-Modified Monomeric GFPs into Membrane Microdomains of Live Cells Zacharias Da mEGFP
2002 Proceedings of the National Academy of Sciences A monomeric red fluorescent protein Tsien Ry, Zacharias Da, Baird Gs, Steinbach Pa, Palmer Ae, Tour O, Campbell Re dimer1, dimer2, mRFP1, tdimer2(12)
2002 Proceedings of the National Academy of Sciences A far-red fluorescent protein with fast maturation and reduced oligomerization tendency from Entacmaea quadricolor (Anthozoa, Actinaria) Wiedenmann J, Schenk A, Rocker C, Girod A, Spindler K-D, Nienhaus Gu eqFP611
2002 Science A Photoactivatable GFP for Selective Photolabeling of Proteins and Cells Patterson Gh mPA-GFP, PA-GFP
2002 Proceedings of the National Academy of Sciences An optical marker based on the UV-induced green-to-red photoconversion of a fluorescent protein Ando R, Hama H, Yamamoto-Hino M, Mizuno H, Miyawaki A Kaede
2002 Journal of Biological Chemistry Crystal Structure of Venus, a Yellow Fluorescent Protein with Improved Maturation and Reduced Environmental Sensitivity Ikura M, Miyawaki A, Nagai T, Alattia J-R, Rekas A Venus
2002 Biochemical Journal Far-red fluorescent tag for protein labelling Fradkov Af, Verkhusha Vv, Staroverov Db, Bulina Me, Yanushevich Yg, Martynov Vi, Lukyanov S, Lukyanov Ka HcRed-Tandem
2002 Biochemistry Green Fluorescent Protein Variants as Ratiometric Dual Emission pH Sensors. 1. Structural Characterization and Preliminary Application† Hanson Gt, Mcananey Tb, Park Es, Rendell Mep, Yarbrough Dk, Chu S, Xi L, Boxer Sg, Montrose Mh, Remington Sj deGFP1, deGFP2, deGFP3, deGFP4
2002 Neuron Rod Cyclic Nucleotide-Gated Channels Have a Stoichiometry of Three CNGA1 Subunits and One CNGB1 Subunit Zheng J, Trudeau Mc, Zagotta Wn Enhanced Cyan-Emitting GFP
2003 BMC Biotechnology Efficiently folding and circularly permuted variants of the Sapphire mutant of GFP. Zapata-Hommer O, Griesbeck O cpT-Sapphire 174-173, T-Sapphire Sapphire,
2003 Limnology and Oceanography Green-fluorescent proteins in Caribbean corals Mazel Ch, Lesser Mp, Gorbunov My, Barry Tm, Farrell Jh, Wyman Kd, Falkowski Pg mcavFP
2003 Biochemical and Biophysical Research Communications A naturally enhanced green fluorescent protein from magnificent sea anemone (Heteractis magnifica) and its functional analysis Tu H, Xiong Q, Zhen S, Zhong X, Peng L, Chen H, Jiang X, Liu W, Yang W, Wei J, Dong M, Wu W, Xu A hmGFP
2003 Structure The 2.2 Å Crystal Structure of a Pocilloporin Pigment Reveals a Nonplanar Chromophore Conformation Prescott M, Ling M, Beddoe T, Oakley Aj, Dove S, Hoegh-Guldberg O, Devenish Rj, Rossjohn J Rtms5
2003 Biochemical Journal Hetero-oligomeric tagging diminishes non-specific aggregation of target proteins fused with Anthozoa fluorescent proteins Bulina Me, Verkhusha Vv, Staroverov Db, Chudakov Dm, Lukyanov Ka M355NA
2003 Molecular Biology and Evolution Molecular Basis and Evolutionary Origins of Color Diversity in Great Star Coral Montastraea cavernosa (Scleractinia: Faviida) Kelmanson Iv mc1, mc2, mc3, mc4, mc5, mc6
2003 Journal of Biological Chemistry A Green-emitting Fluorescent Protein fromGalaxeidaeCoral and Its Monomeric Version for Use in Fluorescent Labeling Karasawa S, Araki T, Yamamoto-Hino M, Miyawaki A AzamiGreen, mAzamiGreen
2003 Biochemical Journal A colourless green fluorescent protein homologue from the non-fluorescent hydromedusa Aequorea coerulescens and its fluorescent mutants Gurskaya Ng, Fradkov Af, Pounkova Ni, Staroverov Db, Bulina Me, Yanushevich Yg, Labas Ya, Lukyanov S, Lukyanov Ka aceGFP-h
2004 Biological Chemistry Probing the role of tryptophans in Aequorea victoria green fluorescent proteins with an expanded genetic code Budisa N, Pal Pp, Alefelder S, Birle P, Krywcun T, Rubini M, Wenger W, Bae Jh, Steiner T avGFP480, avGFP509, avGFP510
2004 Journal of Biological Chemistry Investigating Mitochondrial Redox Potential with Redox-sensitive Green Fluorescent Protein Indicators Hanson Gt, Aggeler R, Oglesbee D, Cannon M, Capaldi Ra, Tsien Ry, Remington Sj roGFP1, roGFP1-R1, roGFP1-R8, roGFP2
2004 Nature Biotechnology An improved cyan fluorescent protein variant useful for FRET Rizzo Ma, Springer Gh, Granada B, Piston Dw Cerulean, D10, ECFP H148D Citrine, ECFP
2004 ChemBioChem Crystallographic Evidence for Isomeric Chromophores in 3-Fluorotyrosyl-Green Fluorescent Protein Bae Jh, Paramita Pal P, Moroder L, Huber R, Budisa N (3-F)Tyr-EGFP, avGFP514
2004 Molecular Biology and Evolution GFP-like Proteins as Ubiquitous Metazoan Superfamily: Evolution of Functional Features and Structural Complexity Shagin Da, Barsova Ev, Yanushevich Yg, Fradkov Af, Lukyanov Ka, Labas Ya, Semenova Tn, Ugalde Ja, Meyers A, Nunez Jm, Widder Ea, Lukyanov Sa, Matz Mv anm1GFP1, anm1GFP2, anm2CP, Jred, laesGFP, pdae1GFP, pmeaGFP1, pmeaGFP2, ppluGFP1, ppluGFP2
2004 Biotechnology Progress Flow Cytometric Screening of cDNA Expression Libraries for Fluorescent Proteins Bessette Ph, Daugherty Ps alajGFP1, alajGFP2, alajGFP3
2004 Comparative Biochemistry and Physiology Part C: Toxicology & Pharmacology Cloning of anthozoan fluorescent protein genes Carter Rw, Schmale Mc, Gibbs Pdl DspR1, DstC1, Fpaagar, Fpag_frag, Fpcondchrom, FPmann, FPmcavgr7.7, FPrfl2.3, McaG1, McaG1ea, McaG2, MfaG1, PdaC1
2004 Biochemical Journal Cyan-emitting and orange-emitting fluorescent proteins as a donor/acceptor pair for fluorescence resonance energy transfer Karasawa S, Araki T, Nagai T, Mizuno H, Miyawaki A KO, MiCy, mKO, mMiCy
2004 FEBS Letters Biophysical characterization of natural and mutant fluorescent proteins cloned from zooxanthellate corals Sun Y, Castner Ew, Lawson Cl, Falkowski Pg mcCFP, mcRFP, mmGFP
2004 PLANT PHYSIOLOGY Use of the Fluorescent Timer DsRED-E5 as Reporter to Monitor Dynamics of Gene Activity in Plants Mirabella R DsRed-Timer
2004 Proceedings of the National Academy of Sciences EosFP, a fluorescent marker protein with UV-inducible green-to-red fluorescence conversion Nienhaus Gu, Spindler K-D, Salih A, Rocker C, Schmitt F, Oswald F, Ivanchenko S, Wiedenmann J d1EosFP, d2EosFP, EosFP, mEos
2004 Science Regulated Fast Nucleocytoplasmic Shuttling Observed by Reversible Protein Highlighting Ando R 22G, Dronpa
2004 Proceedings of the National Academy of Sciences Evolution of new nonantibody proteins via iterative somatic hypermutation Wang L, Jackson Wc, Steinbach Pa, Tsien Ry mPlum, mRaspberry mRFP1.2
2004 Nature Biotechnology Improved monomeric red, orange and yellow fluorescent proteins derived from Discosoma sp. red fluorescent protein Shaner Nc, Campbell Re, Steinbach Pa, Giepmans Bng, Palmer Ae, Tsien Ry dTomato, mBanana, mCherry, mHoneydew, mOFP.T.12, mOFP.T.8, mOrange, mRFP1.1, mRFP1.3, mRFP1.4, mRFP1.5, mStrawberry, mTangerine, tdTomato dimer2, DsRed, DsRed-Express, mRFP1,
2005 Biochemistry zFP538, a Yellow-Fluorescent Protein fromZoanthus, Contains a Novel Three-Ring Chromophore†,‡ Lukyanov Ka, Kallio K, Anderson Dc, Branchaud B, Yarbrough Dk, Wachter Rm, Remington Sj zFP538
2005 Journal of Biomedical Optics Red fluorescent protein eqFP611 and its genetically engineered dimeric variants Wiedenmann J, Vallone B, Renzi F, Nienhaus K, Ivanchenko S, RöCker C, Nienhaus Gu eqFP611 V124T eqFP611
2005 Biophysical Journal High-Contrast Imaging of Fluorescent Protein FRET by Fluorescence Polarization Microscopy Piston Dw, Rizzo Ma mCerulean
2005 Biochemistry Understanding GFP Chromophore Biosynthesis:  Controlling Backbone Cyclization and Modifying Post-translational Chemistry†,‡ Barondeau Dp, Kassmann Cj, Tainer Ja, Getzoff Ed GFPhal
2005 Nature Biotechnology Evolutionary optimization of fluorescent proteins for intracellular FRET Nguyen Aw, Daugherty Ps CFP4, CyPet, YFP3, YPet
2005 EMBO reports Semi-rational engineering of a coral fluorescent protein into an efficient highlighter Tsutsui H, Karasawa S, Shimizu H, Nukina N, Miyawaki A KikGR1
2005 Journal of Microscopy Two-photon excitation and emission spectra of the green fluorescent protein variants ECFP, EGFP and EYFP Spiess E, Bestvater F, Heckel-Pompey A, Toth K, Hacker M, Stobrawa G, Feurer T, Wotzlaw C, Berchner-Pfannschmidt U, Porwol T, Acker H EYFP
2005 Proceedings of the National Academy of Sciences From The Cover: Reversible single-molecule photoswitching in the GFP-like fluorescent protein Dronpa Hofkens J, Miyawaki A, Mizuno H, Verheijen W, Dedecker P, Ando R, Habuchi S Dronpa
2005 Biochemistry Crystallographic Structures ofDiscosomaRed Fluorescent Protein with Immature and Mature Chromophores:  Linking Peptide BondTrans−CisIsomerization and Acylimine Formation in Chromophore Maturation†,‡ Tubbs Jl, Tainer Ja, Getzoff Ed
2005 Biochemical and Biophysical Research Communications Maturation efficiency, trypsin sensitivity, and optical properties of Arg96, Glu222, and Gly67 variants of green fluorescent protein Sniegowski Ja, Phail Me, Wachter Rm avGFP454
2005 Japanese Journal of Applied Physics Tunneling Spectroscopy Analysis of Hexachloro-Fluorescein Phosphoramidite Fluorescent Dye Attached to Deoxyribonucleic Acid Kawai T, Tanaka H, Takahashi T, Kawahara T
2005 Proceedings of the National Academy of Sciences Crystal structures and mutational analysis of amFP486, a cyan fluorescent protein from Anemonia majano Henderson Jn, Remington Sj amFP495, amFP506, amFP515 amFP486,
2005 Nature Methods A guide to choosing fluorescent proteins Tsien Ry, Steinbach Pa, Shaner Nc
2005 Biochemical Journal Far-red fluorescent proteins evolved from a blue chromoprotein fromActinia equina Shkrob Ma, Yanushevich Yg, Chudakov Dm, Gurskaya Ng, Labas Ya, Poponov Sy, Mudrik Nn, Lukyanov S, Lukyanov Ka AQ14, AQ143, AsRed2
2005 Nature Biotechnology A genetically encoded photosensitizer Bulina Me, Chudakov Dm, Britanova Ov, Yanushevich Yg, Staroverov Db, Chepurnykh Tv, Merzlyak Em, Shkrob Ma, Lukyanov S, Lukyanov Ka KillerRed
2005 Nature Biotechnology Engineering and characterization of a superfolder green fluorescent protein Pédelacq J-D, Cabantous S, Tran T, Terwilliger Tc, Waldo Gs Folding Reporter GFP, Superfolder GFP
2006 ChemPhysChem A Comparison of the Fluorescence Dynamics of Single Molecules of a Green Fluorescent Protein: One- versus Two-Photon Excitation Werner Jh, Waldo Gs, Goodwin Pm, Cotlet M Superfolder GFP
2006 Journal of the American Chemical Society Structural Evidence for an Enolate Intermediate in GFP Fluorophore Biosynthesis Barondeau Dp, Tainer Ja, Getzoff Ed BFPsol
2006 Proceedings of the National Academy of Sciences Imaging cellular signals in the heart in vivo: Cardiac expression of the high-signal Ca2+ indicator GCaMP2 Tallini Yn, Ohkura M, Choi B-R, Ji G, Imoto K, Doran R, Lee J, Plan P, Wilson J, Xin H-B, Sanbe A, Gulick J, Mathai J, Robbins J, Salama G, Nakai J, Kotlikoff Mi GCaMP2
2006 Nature Biotechnology Engineering of a monomeric green-to-red photoactivatable fluorescent protein induced by blue light Lukyanov Ka, Lukyanov S, Fradkov Af, Chepurnykh Tv, Staroverov Db, Shcheglov As, Verkhusha Vv, Gurskaya Ng Dendra, Dendra2
2006 Nature Biotechnology A fluorescent variant of a protein from the stony coral Montipora facilitates dual-color single-laser fluorescence cross-correlation spectroscopy Kogure T, Karasawa S, Araki T, Saito K, Kinjo M, Miyawaki A dKeima, dKeima570, mKeima, tKeima
2006 Biochemistry Cyan and Yellow Super Fluorescent Proteins with Improved Brightness, Protein Folding, and FRET Förster Radius†,‡ Kremers G-J, Goedhart J, Van Munster Eb, Gadella Twj mVenus, SCFP1, SCFP2, SCFP3A, SCFP3B, SYFP2 ECFP, EYFP, Venus
2006 Microscopy and Microanalysis Optimization of Pairings and Detection Conditions for Measurement of FRET between Cyan and Yellow Fluorescent Proteins Piston Dw, Zipfel Wr, Segawa K, Springer G, Rizzo Ma mCerulean
2006 Journal of Molecular Biology The 2.1Å Crystal Structure of copGFP, a Representative Member of the Copepod Clade Within the Green Fluorescent Protein Superfamily Wilmann Pg, Battad J, Petersen J, Wilce Mcj, Dove S, Devenish Rj, Prescott M, Rossjohn J ppluGFP2
2006 Marine Biotechnology Variants of Green Fluorescent Protein GFPxm Luo W-X, Cheng T, Guan B-Q, Li S-W, Miao J, Zhang J, Xia N-S GFPxm16, GFPxm161, GFPxm162, GFPxm163, GFPxm18, GFPxm181uv, GFPxm18uv, GFPxm19, GFPxm191uv, GFPxm19uv, OFPxm, ShG24
2006 Nature Methods An improved mRFP1 adds red to bimolecular fluorescence complementation Jach G, Pesch M, Richter K, Frings S, Uhrig Jf mRFP1-Q66C, mRFP1-Q66S, mRFP1-Q66T
2006 Nature Protocols Chromophore-assisted light inactivation (CALI) using the phototoxic fluorescent protein KillerRed Bulina Me, Lukyanov Ka, Britanova Ov, Onichtchouk D, Lukyanov S, Chudakov Dm KillerRed
2006 Biochemistry Novel Chromophores and Buried Charges Control Color in mFruits†,‡ Shu X, Shaner Nc, Yarbrough Ca, Tsien Ry, Remington Sj mCherry, mOrange
2006 EMBO reports Structural basis for the fast maturation of Arthropoda green fluorescent protein Evdokimov Ag, Pokross Me, Egorov Ns, Zaraisky Ag, Yampolsky Iv, Merzlyak Em, Shkoporov An, Sander I, Lukyanov Ka, Chudakov Dm TurboGFP, TurboGFP-V197L
2006 Nature Protocols Evolving proteins in mammalian cells using somatic hypermutation Tsien Ry, Wang L mRFP1.2
2006 Journal of Molecular Biology The 1.7 Å Crystal Structure of Dronpa: A Photoswitchable Green Fluorescent Protein Wilmann Pg, Turcic K, Battad Jm, Wilce Mcj, Devenish Rj, Prescott M, Rossjohn J Dronpa
2006 Nature Biotechnology Blue fluorescent proteins with enhanced brightness and photostability from a structurally targeted library Mena Ma, Treynor Tp, Mayo Sl, Daugherty Ps Azurite, BFP.A5
2006 Biophysical Journal Chromophore-Protein Interactions in the Anthozoan Green Fluorescent Protein asFP499 Nienhaus K, Renzi F, Vallone B, Wiedenmann J, Nienhaus Gu asFP499
2006 Biochemical Journal Directed evolution of a monomeric, bright and photostable version ofClavulariacyan fluorescent protein: structural characterization and applications in fluorescence imaging Ai H-, Henderson Jn, Remington Sj, Campbell Re dTFP0.1, dTFP0.2, mECFP, mTFP0.3, mTFP0.4, mTFP0.5, mTFP0.6, mTFP0.7, mTFP0.8, mTFP0.9, mTFP1 dsFP483, mCerulean,
2007 Microscopy Research and Technique Fluorescence lifetime imaging of coral fluorescent proteins Cox G, Matz M, Salih A amilFP490, amilFP504, amilFP513, amilFP593
2007 BMC Biotechnology Single fluorescent protein-based Ca2+ sensors with increased dynamic range Souslova Ea, Belousov Vv, Lock Jg, Strömblad S, Kasparov S, Bolshakov Ap, Pinelis Vg, Labas Ya, Lukyanov S, Mayr Lm, Chudakov Dm GCaMP2
2007 Biochemical Journal 1.8 Å bright-state structure of the reversibly switchable fluorescent protein Dronpa guides the generation of fast switching variants Stiel Ac, Trowitzsch S, Weber G, Andresen M, Eggeling C, Hell Sw, Jakobs S, Wahl Mc rsFastLime Dronpa-2,
2007 Biochemistry Improved Green and Blue Fluorescent Proteins for Expression in Bacteria and Mammalian Cells†,‡ Kremers G-J, Goedhart J, Van Den Heuvel Dj, Gerritsen Hc, Gadella Twj SBFP1, SBFP2, SGFP1, SGFP2
2007 Biochemical and Biophysical Research Communications Structural characterization of the photoswitchable fluorescent protein Dronpa-C62S Nam K-H, Kwon Oy, Sugiyama K, Lee W-H, Kim Yk, Song Hk, Kim Ee, Park S-Y, Jeon H, Hwang Ky Dronpa-C62S, GFP Dronpa
2007 Proceedings of the National Academy of Sciences Structural basis for reversible photobleaching of a green fluorescent protein homologue Henderson Jn, Ai H-, Campbell Re, Remington Sj mTFP0.7
2007 Biochemistry Exploration of New Chromophore Structures Leads to the Identification of Improved Blue Fluorescent Proteins† Ai H-, Shaner Nc, Cheng Z, Tsien Ry, Campbell Re EBFP1.2, EBFP1.5, EBFP2, mBlueberry1, mBlueberry2, mKalama1
2007 Marine Biotechnology Characterization of Novel Orange Fluorescent Protein Cloned from Cnidarian Tube Anemone Cerianthus sp. Ip Dt-M, Wong K-B, Wan Dc-C OFP
2007 Biophysical Journal Highlighted Generation of Fluorescence Signals Using Simultaneous Two-Color Irradiation on Dronpa Mutants Ando R, Flors C, Mizuno H, Hofkens J, Miyawaki A Dronpa-2, Dronpa-3
2007 Nature Methods Bright monomeric red fluorescent protein with an extended fluorescence lifetime Merzlyak Em, Goedhart J, Shcherbo D, Bulina Me, Shcheglov As, Fradkov Af, Gaintzeva A, Lukyanov Ka, Lukyanov S, Gadella Twj, Chudakov Dm eqFP578, TagRFP, TurboRFP eqFP611, mCherry,
2007 Biophysical Journal Spectroscopic and Structural Study of Proton and Halide Ion Cooperative Binding to GFP Arosio D, Garau G, Ricci F, Marchetti L, Bizzarri R, Nifosì R, Beltram F avGFP
2007 Protein Science An experimental study of GFP-based FRET, with application to intrinsically unstructured proteins Erickson Hp, Briscoe G, Galiacy Sd, Ohashi T CyPet, YPet
2007 ChemBioChem Enhanced Sensitivity of FRET-Based Protease Sensors by Redesign of the GFP Dimerization Interface Merkx M, Meijer Ew, Reulen Swa, Evers Th, Vinkenborg Jl CyPet, YPet
2007 Nature Protocols Tracking intracellular protein movements using photoswitchable fluorescent proteins PS-CFP2 and Dendra2 Lukyanov Ka, Lukyanov S, Chudakov Dm Dendra2
2007 Nature Methods Bright far-red fluorescent protein for whole-body imaging Shcherbo D, Merzlyak Em, Chepurnykh Tv, Fradkov Af, Ermakova Gv, Solovieva Ea, Lukyanov Ka, Bogdanova Ea, Zaraisky Ag, Lukyanov S, Chudakov Dm Katushka, mKate
2007 Biochemistry X-ray Structure of Cerulean GFP:  A Tryptophan-Based Chromophore Useful for Fluorescence Lifetime Imaging†,‡ Malo Gd, Pouwels Lj, Wang M, Weichsel A, Montfort Wr, Rizzo Ma, Piston Dw, Wachter Rm Cerulean
2007 Marine Biotechnology Dynamic Regulation of Fluorescent Proteins from a Single Species of Coral Kao H-T, Sturgis S, Desalle R, Tsai J, Davis D, Gruber Df, Pieribone Va mcFP497, mcFP503, mcFP506
2007 Protein Engineering, Design and Selection Structural rearrangements near the chromophore influence the maturation speed and brightness of DsRed variants Strongin De, Bevis B, Khuong N, Downing Me, Strack Rl, Sundaram K, Glick Bs, Keenan Rj DsRed.M1
2007 Marine Biotechnology Gene Expression of a Green Fluorescent Protein Homolog as a Host-Specific Biomarker of Heat Stress Within a Reef-Building Coral Smith-Keune C, Dove S A1a
2007 Journal of Molecular Biology Crystal Structures of the Luciferase and Green Fluorescent Protein from Renilla reniformis Loening Am, Fenn Td, Gambhir Ss rrGFP
2007 Journal of Cell Science Advances in fluorescent protein technology Shaner Nc, Patterson Gh, Davidson Mw YPet
2008 BMC Biology Hue-shifted monomeric variants of Clavularia cyan fluorescent protein: identification of the molecular determinants of color and applications in fluorescence imaging Ai H-, Olenych Sg, Wong P, Davidson Mw, Campbell Re G1, G2, G3, mTFP1-Y67H, mTFP1-Y67W, mWasabi
2008 Biology Direct A family of GFP-like proteins with different spectral properties in lancelet Branchiostoma floridae Baumann D, Cook M, Ma L, Mushegian A, Sanders E, Schwartz J, Yu Cr LanFP1, LanFP2
2008 Cell Visualizing Spatiotemporal Dynamics of Multicellular Cell-Cycle Progression Sakaue-Sawano A, Kurokawa H, Morimura T, Hanyu A, Hama H, Osawa H, Kashiwagi S, Fukami K, Miyata T, Miyoshi H, Imamura T, Ogawa M, Masai H, Miyawaki A mKO2
2008 PLoS ONE Synthetic Biology of Proteins: Tuning GFPs Folding and Stability with Fluoroproline Steiner T, Hess P, Bae Jh, Wiltschi B, Moroder L, Budisa N Superfolder GFP
2008 Chemistry & Biology Optimized and Far-Red-Emitting Variants of Fluorescent Protein eqFP611 Kredel S, Nienhaus K, Oswald F, Wolff M, Ivanchenko S, Cymer F, Jeromin A, Michel Fj, Spindler K-D, Heilker R, Nienhaus Gu, Wiedenmann J d-RFP618, RFP611, RFP618, RFP630, RFP637, RFP639, td-RFP611, td-RFP639 eqFP611,
2008 Marine Biotechnology Spectral Diversity of Fluorescent Proteins from the Anthozoan Corynactis californica Schnitzler Ce, Keenan Rj, Mccord R, Matysik A, Christianson Lm, Haddock Shd ccalGFP1, ccalGFP3, ccalOFP1, ccalRFP1, ccalYFP1, rfloGFP2, rrenGFP amFP486, asCP562, asFP499, dendFP, DsRed, EosFP, eqFP611, gtenCP, Kaede, McaG2, mcavRFP, mcCFP, ptilGFP, zoan2RFP, ZsGreen
2008 Protein Science Design of a highly specific and noninvasive biosensor suitable for real-time in vivo imaging of mercury (II) uptake Chapleau Rr, Blomberg R, Ford Pc, Sagermann M eGFP203C, eGFP205C
2008 Nature Methods Fluorescent protein FRET pairs for ratiometric imaging of dual biosensors Ai H-, Hazelwood Kl, Davidson Mw, Campbell Re mAmetrine, mT-Sapphire
2008 Nature Methods Improving the photostability of bright monomeric orange and red fluorescent proteins Shaner Nc, Lin Mz, Mckeown Mr, Steinbach Pa, Hazelwood Kl, Davidson Mw, Tsien Ry mApple, mOrange2, TagRFP-T mEGFP,
2008 The Journal of Immunology Sequential Binding of Cytosolic Phox Complex to Phagosomes through Regulated Adaptor Proteins: Evaluation Using the Novel Monomeric Kusabira-Green System and Live Imaging of Phagocytosis Ueyama T, Kusakabe T, Karasawa S, Kawasaki T, Shimizu A, Son J, Leto Tl, Miyawaki A, Saito N mKG
2008 Nature Methods Improving membrane voltage measurements using FRET with new fluorescent proteins Tsutsui H, Karasawa S, Okamura Y, Miyawaki A mKOκ, mUKG
2008 PLoS ONE Diversity and Evolution of Coral Fluorescent Proteins Alieva No, Konzen Ka, Field Sf, Meleshkevitch Ea, Hunt Me, Beltran-Ramirez V, Miller Dj, Wiedenmann J, Salih A, Matz Mv aacuCP, aacuGFP1, aacuGFP2, aeurGFP, afraGFP, ahyaCP, amilCP, anobCFP1, anobCFP2, anobGFP, dhorGFP, dhorRFP, eechGFP1, eechGFP2, eechGFP3, eechRFP, efasCFP, efasGFP, eforCP, fabdGFP, gdjiCP, gfasCP, gfasGFP, meffCFP, meffCP, meffGFP, meffRFP, meleCFP, meleRFP, mmilCFP, PlamGFP, pporGFP, pporRFP, psamCFP, sarcGFP, scubRFP, spisCP, stylCP, stylGFP amilFP490, amilFP513, amilFP593,
2008 Marine Ecology Progress Series Blue light regulation of host pigment in reef-building corals D’Angelo C, Denzel A, Vogt A, Matz Mv, Oswald F, Salih A, Nienhaus Gu, Wiedenmann J amilFP484, amilFP497, amilFP512, amilFP597, apulCP584, apulFP483
2008 Journal of Biological Chemistry A Crystallographic Study of Bright Far-Red Fluorescent Protein mKate Reveals pH-inducedcis-transIsomerization of the Chromophore Pletnev S, Shcherbo D, Chudakov Dm, Pletneva N, Merzlyak Em, Wlodawer A, Dauter Z, Pletnev V mKate, mKate S158A
2008 Nature Biotechnology Photoswitchable fluorescent proteins enable monochromatic multilabel imaging and dual color fluorescence nanoscopy Andresen M, Stiel Ac, Fölling J, Wenzel D, Schönle A, Egner A, Eggeling C, Hell Sw, Jakobs S bsDronpa, Padron, Padron(star) rsFastLime
2008 Cloning and Stem Cells Transgenic-Cloned Pigs Systemically Expressing Red Fluorescent Protein, Kusabira-Orange Matsunari H, Onodera M, Tada N, Mochizuki H, Karasawa S, Haruyama E, Nakayama N, Saito H, Ueno S, Kurome M, Miyawaki A, Nagashima H KO
2008 Biophysical Journal Generation of Monomeric Reversibly Switchable Red Fluorescent Proteins for Far-Field Fluorescence Nanoscopy Stiel Ac, Andresen M, Bock H, Hilbert M, Schilde J, Schönle A, Eggeling C, Egner A, Hell Sw, Jakobs S rsCherry, rsCherryRev
2008 Proceedings of the National Academy of Sciences Alteration of citrine structure by hydrostatic pressure explains the accompanying spectral shift Barstow B, Ando N, Kim Cu, Gruner Sm Citrine
2008 Chemistry & Biology Conversion of Red Fluorescent Protein into a Bright Blue Probe Subach Om, Gundorov Is, Yoshimura M, Subach Fv, Zhang J, Grüenwald D, Souslova Ea, Chudakov Dm, Verkhusha Vv TagBFP, TagGFP, TagGFP2 Azurite, EBFP2,
2008 Nature Methods A noncytotoxic DsRed variant for whole-cell labeling Strack Rl, Strongin De, Bhattacharyya D, Tao W, Berman A, Broxmeyer He, Keenan Rj, Glick Bs DsRed-Express2, DsRed-Max DsRed-Express, TurboRFP
2008 PLoS ONE A Green Fluorescent Protein with Photoswitchable Emission from the Deep Sea Vogt A, D'Angelo C, Oswald F, Denzel A, Mazel Ch, Matz Mv, Ivanchenko S, Nienhaus Gu, Wiedenmann J cerFP505
2008 Structure Structural Basis for Calcium Sensing by GCaMP2 Wang Q, Shui B, Kotlikoff Mi, Sondermann H cEGFP GCaMP2
2008 Proceedings of the National Academy of Sciences The photoreversible fluorescent protein iLOV outperforms GFP as a reporter of plant virus infection Chapman S, Faulkner C, Kaiserli E, Garcia-Mata C, Savenkov Ei, Roberts Ag, Oparka Kj, Christie Jm iLov
2008 PLoS ONE mKikGR, a Monomeric Photoswitchable Fluorescent Protein Habuchi S, Tsutsui H, Kochaniak Ab, Miyawaki A, Van Oijen Am mKikGR
2009 BMC Biotechnology Noncytotoxic orange and red/green derivatives of DsRed-Express2 for whole-cell labeling Strack Rl, Bhattacharyya D, Glick Bs, Keenan Rj E2-Orange
2009 Molecular Biotechnology DSN Depletion is a Simple Method to Remove Selected Transcripts from cDNA Populations Bogdanova Ea, Shagina Ia, Mudrik E, Ivanov I, Amon P, Vagner Ll, Lukyanov Sa, Shagin Da zGFP, zRFP
2009 Nature Methods A bright and photostable photoconvertible fluorescent protein Mckinney Sa, Murphy Cs, Hazelwood Kl, Davidson Mw, Looger Ll mEos2
2009 Nature Methods Photoactivatable mCherry for high-resolution two-color fluorescence microscopy Subach Fv, Patterson Gh, Manley S, Gillette Jm, Lippincott-Schwartz J, Verkhusha Vv PAmCherry
2009 PLoS ONE mRuby, a Bright Monomeric Red Fluorescent Protein for Labeling of Subcellular Structures Kredel S, Oswald F, Nienhaus K, Deuschle K, Röcker C, Wolff M, Heilker R, Nienhaus Gu, Wiedenmann J mRuby
2009 Biochemical Journal Far-red fluorescent tags for protein imaging in living tissues Shcherbo D, Murphy Cs, Ermakova Gv, Solovieva Ea, Chepurnykh Tv, Shcheglov As, Verkhusha Vv, Pletnev Vz, Hazelwood Kl, Roche Pm, Lukyanov S, Zaraisky Ag, Davidson Mw, Chudakov Dm mKate2, tdKatushka2
2009 Journal of the American Chemical Society Structure and Mechanism of the Photoactivatable Green Fluorescent Protein Remington Sj, Huppert D, Kallio K, Heenan Jr, Gepshtein R, Henderson Jn PA-GFP
2009 Nature Methods An ultramarine fluorescent protein with increased photostability and pH insensitivity Tomosugi W, Matsuda T, Tani T, Nemoto T, Kotera I, Saito K, Horikawa K, Nagai T Sirius
2009 Science Mammalian Expression of Infrared Fluorescent Proteins Engineered from a Bacterial Phytochrome Shu X, Royant A, Lin Mz, Aguilera Ta, Lev-Ram V, Steinbach Pa, Tsien Ry iFP1.4
2009 Journal of Biological Chemistry Red Fluorescent Protein pH Biosensor to Detect Concentrative Nucleoside Transport Johnson De, Ai H-, Wong P, Young Jd, Campbell Re, Casey Jr mNectarine
2009 Biochemistry Structural Basis of Enhanced Photoconversion Yield in Green Fluorescent Protein-like Protein Dendra2 Adam V, Nienhaus K, Bourgeois D, Nienhaus Gu cmemFP507
2009 Biochemistry Crystal Structure of a New Cyan Fluorescent Protein and Its Hue-Shifted Variants, Kikuchi A, Fukumura E, Karasawa S, Shiro Y, Miyawaki A KCY, KCY-G4219, KCY-G4219-38L, KCY-R1, KCY-R1-158A, KCY-R1-38H, KCY-R1-38L
2009 FEBS Letters Structural basis for the phototoxicity of the fluorescent protein KillerRed Carpentier P, Violot S, Blanchoin L, Bourgeois D KillerRed
2009 Journal of the American Chemical Society Reverse pH-Dependence of Chromophore Protonation Explains the Large Stokes Shift of the Red Fluorescent Protein mKeima Violot S, Carpentier P, Blanchoin L, Bourgeois D mKeima
2009 Biosensors and Bioelectronics A novel far-red bimolecular fluorescence complementation system that allows for efficient visualization of protein interactions under physiological conditions Chu J, Zhang Z, Zheng Y, Yang J, Qin L, Lu J, Huang Z-L, Zeng S, Luo Q mLumin
2009 Journal of Biological Chemistry Structural Basis for Phototoxicity of the Genetically Encoded Photosensitizer KillerRed Pletnev S, Gurskaya Ng, Pletneva Nv, Lukyanov Ka, Chudakov Dm, Martynov Vi, Popov Vo, Kovalchuk Mv, Wlodawer A, Dauter Z, Pletnev V KillerRed
2009 Biochemistry A Rapidly Maturing Far-Red Derivative of DsRed-Express2 for Whole-Cell Labeling Strack Rl, Hein B, Bhattacharyya D, Hell Sw, Keenan Rj, Glick Bs E2-Crimson
2009 Molecular Biology and Evolution Novel Internal Regions of Fluorescent Proteins Undergo Divergent Evolutionary Patterns Gruber Df, Desalle R, Lienau Ek, Tchernov D, Pieribone Va, Kao H-T acanFP, echFP, echiFP, fcFP, fcomFP, meruFP, montFP, psupFP, scleFP1, scleFP2, sympFP
2009 Journal of the American Chemical Society Excited State Proton Transfer in the Red Fluorescent Protein mKeima Henderson Jn, Osborn Mf, Koon N, Gepshtein R, Huppert D, Remington Sj mKeima
2009 Biochemistry Intrinsic Dynamics in ECFP and Cerulean Control Fluorescence Quantum Yield Lelimousin M, Noirclerc-Savoye M, Lazareno-Saez C, Paetzold B, Le Vot S, Chazal R, Macheboeuf P, Field Mj, Bourgeois D, Royant A Cerulean, ECFP
2009 Chemistry & Biology Autofluorescent Proteins with Excitation in the Optical Window for Intravital Imaging in Mammals Lin Mz, Mckeown Mr, Ng H-L, Aguilera Ta, Shaner Nc, Campbell Re, Adams Sr, Gross La, Ma W, Alber T, Tsien Ry mGrape1, mGrape2, mGrape3, mKate M41G S158C, mKate S158A, mKate S158C, mNeptune, Neptune
2010 Molecular Biology of the Cell Age-dependent Preferential Dense-Core Vesicle Exocytosis in Neuroendocrine Cells Revealed by Newly Developed Monomeric Fluorescent Timer Protein Tsuboi T, Kitaguchi T, Karasawa S, Fukuda M, Miyawaki A mK-GO DsRed-Timer,
2010 Photochemical & Photobiological Sciences Green-fluorescent protein from the bioluminescent jellyfish Clytia gregaria: cDNA cloning, expression, and characterization of novel recombinant protein Markova Sv, Burakova Lp, Frank La, Golz S, Korostileva Ka, Vysotski Es cgreGFP
2010 Nature Methods Bright cyan fluorescent protein variants identified by fluorescence lifetime screening Goedhart J, Van Weeren L, Hink Ma, Vischer Noe, Jalink K, Gadella Twj mTurquoise, mTurquoise-DR, mTurquoise-GL, mTurquoise-GV, mTurquoise-RA, Turquoise-GL
2010 Journal of the American Chemical Society Understanding Blue-to-Red Conversion in Monomeric Fluorescent Timers and Hydrolytic Degradation of Their Chromophores Pletnev S, Subach Fv, Dauter Z, Wlodawer A, Verkhusha Vv Blue102
2010 Proceedings of the National Academy of Sciences Monomeric red fluorescent proteins with a large Stokes shift Piatkevich Kd, Hulit J, Subach Om, Wu B, Abdulla A, Segall Je, Verkhusha Vv LSS-mKate1, LSS-mKate2
2010 Journal of Biological Chemistry Structural Evidence for a Dehydrated Intermediate in Green Fluorescent Protein Chromophore Biosynthesis Pletneva Nv, Pletnev Vz, Lukyanov Ka, Gurskaya Ng, Goryacheva Ea, Martynov Vi, Wlodawer A, Dauter Z, Pletnev S aceGFP, aceGFP-G222E-Y220L
2010 Journal of Biological Chemistry Molecular Basis of the Light-driven Switching of the Photochromic Fluorescent Protein Padron Brakemann T, Weber G, Andresen M, Groenhof G, Stiel Ac, Trowitzsch S, Eggeling C, Grubmüller H, Hell Sw, Wahl Mc, Jakobs S Padron0.9
2010 FEBS Journal A new bright green-emitting fluorescent protein - engineered monomeric and dimeric forms Ilagan Rp, Rhoades E, Gruber Df, Kao H-T, Pieribone Va, Regan L dVFP, mVFP, mVFP1, VFP
2010 Journal of the American Chemical Society Bright Monomeric Photoactivatable Red Fluorescent Protein for Two-Color Super-Resolution sptPALM of Live Cells Subach Fv, Patterson Gh, Renz M, Lippincott-Schwartz J, Verkhusha Vv PATagRFP, PATagRFP1297, PATagRFP1314
2010 Biochemical and Biophysical Research Communications Novel fluorescent protein from Hydnophora rigida possess cyano emission Bokhari H, Smith C, Veerendra K, Sivaraman J, Sikaroodi M, Gillevet P HriCFP HriGFP
2010 Biophysical Journal Far-Red Fluorescent Protein Excitable with Red Lasers for Flow Cytometry and Superresolution STED Nanoscopy Morozova Ks, Piatkevich Kd, Gould Tj, Zhang J, Bewersdorf J, Verkhusha Vv TagRFP657
2010 Nature Methods A photoactivatable marker protein for pulse-chase imaging with superresolution Fuchs J, Böhme S, Oswald F, Hedde Pn, Krause M, Wiedenmann J, Nienhaus Gu mIrisFP
2010 PLoS ONE Very Bright Green Fluorescent Proteins from the Pontellid Copepod Pontella mimocerami Hunt Me, Scherrer Mp, Ferrari Fd, Matz Mv pmimGFP1, pmimGFP2
2010 Journal of Molecular Biology A Monomeric Photoconvertible Fluorescent Protein for Imaging of Dynamic Protein Localization Hoi H, Shaner Nc, Davidson Mw, Cairo Cw, Wang J, Campbell Re mClavGR2
2010 Nature Methods Near-infrared fluorescent proteins Chudakov Dm, Luker Gd, Loschenov Vb, Lukyanov Ka, Zaraisky Ag, Britanova Ov, Shidlovskiy Km, Strukova L, Gorodnicheva Tv, Souslova Ea, Schmidt Bt, Luker Ke, Ryabova Av, Shemiakina Ii, Shcherbo D eqFP650, eqFP670
2010 Proceedings of the National Academy of Sciences Generation of longer emission wavelength red fluorescent proteins using computationally designed libraries Chica Ra, Moore Mm, Allen Bd, Mayo Sl mRojoA, mRojoB, mRouge
2011 Photochemical & Photobiological Sciences Multi-colored homologs of the green fluorescent protein from hydromedusa Obelia sp. Aglyamova Gv, Hunt Me, Modi Ck, Matz Mv obeCFP, obeGFP, obeYFP
2011 PLoS ONE An Improved Cerulean Fluorescent Protein with Enhanced Brightness and Reduced Reversible Photoswitching Markwardt Ml, Kremers G-J, Kraft Ca, Ray K, Cranfill Pjc, Wilson Ka, Day Rn, Wachter Rm, Davidson Mw, Rizzo Ma mCerulean2, mCerulean2.D3, mCerulean2.N, mCerulean2.N(T65S), mCerulean3, mCerulean.B, mCerulean.B2, mCerulean.B24 mTurquoise
2011 Nature Methods Two-photon absorption properties of fluorescent proteins Rebane A, Hughes Te, Tillo Se, Makarov Ns, Drobizhev M Citrine, DsRed2, E2-Crimson, EBFP1.2, EBFP1.5, EBFP2, ECFP, EGFP, eqFP650, eqFP670, G1, G3, Katushka, mAmetrine, mBanana, mBlueberry1, mCerulean, mCherry, mCitrine, mGrape3, mKalama1, mKate, mKate2, mKOκ, mNeptune, mOrange, mPlum, mRaspberry, mRFP1, mTangerine, mTFP0.7, mTFP1, mWasabi, Neptune, TagBFP, TagGFP2, TagRFP, tdKatushka2, tdTomato
2011 PLoS ONE Circular Permutation of Red Fluorescent Proteins Shui B, Wang Q, Lee F, Byrnes Lj, Chudakov Dm, Lukyanov Sa, Sondermann H, Kotlikoff Mi cp-mKate
2011 Protein Science Crystallographic study of red fluorescent protein eqFP578 and its far-red variant Katushka reveals opposite pH-induced isomerization of chromophore Pletneva Nv, Pletnev Vz, Shemiakina Ii, Chudakov Dm, Artemyev I, Wlodawer A, Dauter Z, Pletnev S Katushka
2011 Nature Biotechnology Bright and stable near-infrared fluorescent protein for in vivo imaging Filonov Gs, Piatkevich Kd, Ting L-M, Zhang J, Kim K, Verkhusha Vv iRFP713
2011 Nature Methods A photoswitchable orange-to-far-red fluorescent protein, PSmOrange Subach Om, Patterson Gh, Ting L-M, Wang Y, Condeelis Js, Verkhusha Vv PSmOrange
2011 Biophysical Journal Superresolution Imaging of Multiple Fluorescent Proteins with Highly Overlapping Emission Spectra in Living Cells Gunewardene Ms, Subach Fv, Gould Tj, Penoncello Gp, Gudheti Mv, Verkhusha Vv, Hess St PAmKate
2011 Nature Biotechnology A reversibly photoswitchable GFP-like protein with fluorescence excitation decoupled from switching Brakemann T, Stiel Ac, Weber G, Andresen M, Testa I, Grotjohann T, Leutenegger M, Plessmann U, Urlaub H, Eggeling C, Wahl Mc, Hell Sw, Jakobs S Dreiklang
2011 Nature Diffraction-unlimited all-optical imaging and writing with a photochromic GFP Grotjohann T, Testa I, Leutenegger M, Bock H, Urban Nt, Lavoie-Cardinal F, Willig Ki, Eggeling C, Jakobs S, Hell Sw rsEGFP
2011 PLoS ONE An Enhanced Monomeric Blue Fluorescent Protein with the High Chemical Stability of the Chromophore Subach Om, Cranfill Pj, Davidson Mw, Verkhusha Vv mTagBFP2
2011 Journal of Biological Chemistry Structure-guided Engineering Enhances a Phytochrome-based Infrared Fluorescent Protein Forest Kt, Anstrom Dm, Satyshur Ka, Auldridge Me Wi-Phy
2012 Proceedings of the National Academy of Sciences A unique series of reversibly switchable fluorescent proteins with beneficial properties for various applications Chang H, Zhang M, Ji W, Chen J, Zhang Y, Liu B, Lu J, Zhang J, Xu P, Xu T mGeos-C, mGeos-E, mGeos-F, mGeos-L, mGeos-M, mGeos-S
2012 Journal of Molecular Biology A Structural Basis for Reversible Photoswitching of Absorbance Spectra in Red Fluorescent Protein rsTagRFP Pletnev S, Subach Fv, Dauter Z, Wlodawer A, Verkhusha Vv rsTagRFP
2012 Nature Communications Structure-guided evolution of cyan fluorescent proteins towards a quantum yield of 93% Goedhart J, Von Stetten D, Noirclerc-Savoye M, Lelimousin M, Joosen L, Hink Ma, Van Weeren L, Gadella Twj, Royant A mTurquoise-146G, mTurquoise-146S, mTurquoise2
2012 Journal of the American Chemical Society An Orange Fluorescent Protein with a Large Stokes Shift for Single-Excitation Multicolor FCCS and FRET Imaging Shcherbakova Dm, Hink Ma, Joosen L, Gadella Twj, Verkhusha Vv LSSmOrange
2012 Nature Methods Rational design of true monomeric and bright photoactivatable fluorescent proteins Zhang M, Chang H, Zhang Y, Yu J, Wu L, Ji W, Chen J, Liu B, Lu J, Liu Y, Zhang J, Xu P, Xu T mEos2-NA, mEos3.1, mEos3.2 mEos2,
2012 PLoS ONE Development of Cysteine-Free Fluorescent Proteins for the Oxidative Environment Suzuki T, Arai S, Takeuchi M, Sakurai C, Ebana H, Higashi T, Hashimoto H, Hatsuzawa K, Wada I cfSGFP2, cgfmKate2, cgfTagRFP
2012 PLoS ONE Ultramarine, a Chromoprotein Acceptor for Förster Resonance Energy Transfer Pettikiriarachchi A, Gong L, Perugini Ma, Devenish Rj, Prescott M mRtms5, Ultramarine
2012 Nucleic Acids Research Simplification of the genetic code: restricted diversity of genetically encoded amino acids Kawahara-Kobayashi A, Masuda A, Araiso Y, Sakai Y, Kohda A, Uchiyama M, Asami S, Matsuda T, Ishitani R, Dohmae N, Yokoyama S, Kigawa T, Nureki O, Kiga D Trp-less GFP
2012 Journal of the American Chemical Society A FRET-Facilitated Photoswitching Using an Orange Fluorescent Protein with the Fast Photoconversion Kinetics Subach Om, Entenberg D, Condeelis Js, Verkhusha Vv PsmOrange2
2012 Angewandte Chemie International Edition Genetic Incorporation of a Metal-Chelating Amino Acid as a Probe for Protein Electron Transfer Liu X, Li J, Dong J, Hu C, Gong W, Wang J GFP-151pyTyrCu, GFP-Tyr151pyz
2012 Nature Methods Improving FRET dynamic range with bright green and red fluorescent proteins Lam Aj, St-Pierre F, Gong Y, Marshall Jd, Cranfill Pj, Baird Ma, Mckeown Mr, Wiedenmann J, Davidson Mw, Schnitzer Mj, Tsien Ry, Lin Mz Clover, mRuby2 eqFP611,
2012 PLoS ONE Crystal Structure of Enhanced Green Fluorescent Protein to 1.35 Å Resolution Reveals Alternative Conformations for Glu222 Arpino Jaj, Rizkallah Pj, Jones Dd EGFP
2012 Journal of the American Chemical Society GFP-Like Phototransformation Mechanisms in the Cytotoxic Fluorescent Protein KillerRed Unraveled by Structural and Spectroscopic Investigations De Rosny E, Carpentier P A44-KR
2012 Acta Crystallographica Section D Biological Crystallography Structural basis for the influence of a single mutation K145N on the oligomerization and photoswitching rate of Dronpa Nguyen Bich N, Moeyaert B, Van Hecke K, Dedecker P, Mizuno H, Hofkens J, Van Meervelt L PDM1-4
2012 Nature Communications A monomeric red fluorescent protein with low cytotoxicity Shemiakina Ii, Ermakova Gv, Cranfill Pj, Baird Ma, Evans Ra, Souslova Ea, Staroverov Db, Gorokhovatsky Ay, Putintseva Ev, Gorodnicheva Tv, Chepurnykh Tv, Strukova L, Lukyanov S, Zaraisky Ag, Davidson Mw, Chudakov Dm, Shcherbo D FusionRed, mKate2.5
2012 PLoS ONE mMaple: A Photoconvertible Fluorescent Protein for Use in Multiple Imaging Modalities Mcevoy Al, Hoi H, Bates M, Platonova E, Cranfill Pj, Baird Ma, Davidson Mw, Ewers H, Liphardt J, Campbell Re mMaple
2012 PLoS ONE Recovery of Red Fluorescent Protein Chromophore Maturation Deficiency through Rational Design Moore Mm, Oteng-Pabi Sk, Pandelieva At, Mayo Sl, Chica Ra mPlum-E16P
2012 eLife rsEGFP2 enables fast RESOLFT nanoscopy of living cells Grotjohann T, Testa I, Reuss M, Brakemann T, Eggeling C, Hell Sw, Jakobs S rsEGFP2
2013 Mol. BioSyst. Minimum set of mutations needed to optimize cyan fluorescent proteins for live cell imaging Erard M, Fredj A, Pasquier H, Beltolngar D-B, Bousmah Y, Derrien V, Vincent P, Merola F Aquamarine
2013 Frontiers in Molecular Neuroscience Genetically encoded calcium indicators for multi-color neural activity imaging and combination with optogenetics Akerboom J, Carreras Calderón N, Tian L, Wabnig S, Prigge M, Tolö J, Gordus A, Orger Mb, Severi Ke, Macklin Jj, Patel R, Pulver Sr, Wardill Tj, Fischer E, Schüler C, Chen T-W, Sarkisyan Ks, Marvin Js, Bargmann Ci, Kim Ds, Kügler S, Lagnado L, Hegemann P, Gottschalk A, Schreiter Er, Looger Ll RCaMP
2013 Frontiers in Microbiology The genome of the endophytic bacterium H. frisingense GSF30T identifies diverse strategies in the Herbaspirillum genus to interact with plants Straub D, Rothballer M, Hartmann A, Ludewig U hfriFP
2013 Biochemical and Biophysical Research Communications Cysteineless non-glycosylated monomeric blue fluorescent protein, secBFP2, for studies in the eukaryotic secretory pathway Snapp El, Verkhusha Vv, Jaureguiberry-Bravo M, Subach Om, Costantini Lm secBFP2
2013 Coral Reefs Screening by coral green fluorescent protein (GFP)-like chromoproteins supports a role in photoprotection of zooxanthellae Smith Eg, D’Angelo C, Salih A, Wiedenmann J amilCP580, amilCP586, amilCP604
2013 Journal of the American Chemical Society Improving the Second-Order Nonlinear Optical Response of Fluorescent Proteins: The Symmetry Argument De Meulenaere E, Nguyen Bich N, De Wergifosse M, Van Hecke K, Van Meervelt L, Vanderleyden J, Champagne B, Clays K SHardonnay
2013 Nature Methods A bright monomeric green fluorescent protein derived from Branchiostoma lanceolatum Shaner Nc, Lambert Gg, Chammas A, Ni Y, Cranfill Pj, Baird Ma, Sell Br, Allen Jr, Day Rn, Israelsson M, Davidson Mw, Wang J dLanYFP, LanYFP, mNeonGreen Clover, mTurquoise2
2013 Molecular Immunology Identification of a MHC I-restricted epitope of DsRed in C57BL/6 mice Davey Gm, Mueller Sn, Van Vliet C, Gigowski M, Zaid A, Davies B, Carbone Fr, Heath Wr FP586
2013 Acta Crystallographica Section D Biological Crystallography Yellow fluorescent protein phiYFPv (Phialidium): structure and structure-based mutagenesis Pletneva Nv, Pletnev Vz, Souslova E, Chudakov Dm, Lukyanov S, Martynov Vi, Arhipova S, Artemyev I, Wlodawer A, Dauter Z, Pletnev S phiYFPv
2013 Scientific Reports Extended Stokes Shift in Fluorescent Proteins: Chromophore–Protein Interactions in a Near-Infrared TagRFP675 Variant Piatkevich Kd, Malashkevich Vn, Morozova Ks, Nemkovich Na, Almo Sc, Verkhusha Vv TagRFP675
2013 Cell A Bilirubin-Inducible Fluorescent Protein from Eel Muscle Miyawaki A, Shimogori T, Hirabayashi Y, Kobayashi T, Greimel P, Miyatake H, Ando R, Kumagai A UnaG
2013 Nature Methods Near-infrared fluorescent proteins for multicolor in vivo imaging Shcherbakova Dm, Verkhusha Vv iRFP670, iRFP682, iRFP702, iRFP720
2013 PLoS ONE mBeRFP, an Improved Large Stokes Shift Red Fluorescent Protein Yang J, Wang L, Yang F, Luo H, Xu L, Lu J, Zeng S, Zhang Z mBeRFP LSS-mKate2, mKeima
2013 Acta Crystallographica Section D Biological Crystallography Structure of the red fluorescent protein from a lancelet (Branchiostoma lanceolatum): a novel GYG chromophore covalently bound to a nearby tyrosine Pletnev Vz, Pletneva Nv, Lukyanov Ka, Souslova Ea, Fradkov Af, Chudakov Dm, Chepurnykh T, Yampolsky Iv, Wlodawer A, Dauter Z, Pletnev S laGFP, lanRFP-ΔS83l, laRFP
2013 Scientific Reports SuperNova, a monomeric photosensitizing fluorescent protein for chromophore-assisted light inactivation Takemoto K, Matsuda T, Sakai N, Fu D, Noda M, Uchiyama S, Kotera I, Arai Y, Horiuchi M, Fukui K, Ayabe T, Inagaki F, Suzuki H, Nagai T SuperNova
2013 Chemistry & Biology An Engineered Monomeric Zoanthus sp. Yellow Fluorescent Protein Hoi H, Howe Es, Ding Y, Zhang W, Baird Ma, Sell Br, Allen Jr, Davidson Mw, Campbell Re mPapaya, mPapaya0.7
2013 Journal of Neuroscience Visualization of Synaptic Inhibition with an Optogenetic Sensor Developed by Cell-Free Protein Engineering Automation Grimley Js, Li L, Wang W, Wen L, Beese Ls, Hellinga Hw, Augustine Gj Clomeleon
2013 Biochemistry Acid–Base Catalysis and Crystal Structures of a Least Evolved Ancestral GFP-like Protein Undergoing Green-to-Red Photoconversion Kim H, Grunkemeyer Tj, Modi C, Chen L, Fromme R, Matz Mv, Wachter Rm LEA
2014 Nature Methods Single-molecule evaluation of fluorescent protein photoactivation efficiency using an in vivo nanotemplate Durisic N, Laparra-Cuervo L, Sandoval-Álvarez , Borbely Js, Lakadamyali M Dendra2, mClavGR2, mEos2, mEos3.2, mMaple, PA-GFP, PAmCherry
2014 ACS Nano Green-to-Red Photoconvertible Dronpa Mutant for Multimodal Super-resolution Fluorescence Microscopy Moeyaert B, Nguyen Bich N, De Zitter E, Rocha S, Clays K, Mizuno H, Van Meervelt L, Hofkens J, Dedecker P ffDronpa, pcDronpa2
2014 Nature Methods Non-invasive intravital imaging of cellular differentiation with a bright red-excitable fluorescent protein Chu J, Haynes Rd, Corbel Sy, Li P, González-González E, Burg Js, Ataie Nj, Lam Aj, Cranfill Pj, Baird Ma, Davidson Mw, Ng H-L, Garcia Kc, Contag Ch, Shen K, Blau Hm, Lin Mz mCardinal, mNeptune2, mNeptune2.5
2014 Open Biology An endogenous green fluorescent protein-photoprotein pair in Clytia hemisphaerica eggs shows co-targeting to mitochondria and efficient bioluminescence energy transfer Fourrage C, Swann K, Gonzalez Garcia Jr, Campbell Ak, Houliston E CheGFP1, CheGFP2, CheGFP3, CheGFP4
2014 PLoS ONE An Engineered Palette of Metal Ion Quenchable Fluorescent Proteins Yu X, Strub M-P, Barnard Tj, Noinaj N, Piszczek G, Buchanan Sk, Taraska Jw iq-EBFP2, iq-mApple, iq-mCerulean3, iq-mEmerald, iq-mKate2, iq-mVenus
2014 Biochemical and Biophysical Research Communications Novel fluorescent protein from Hydnophora rigida possesses green emission Idrees M, Thangavelu K, Sikaroodi M, Smith C, Sivaraman J, Gillevet Pm, Bokhari H HriGFP
2014 Nature Communications An improved monomeric infrared fluorescent protein for neuronal and tumour brain imaging Yu D, Gustafson Wc, Han C, Lafaye C, Noirclerc-Savoye M, Ge W-P, Thayer Da, Huang H, Kornberg Tb, Royant A, Jan Ly, Jan Yn, Weiss Wa, Shu X iFP2.0
2014 Proceedings of the National Academy of Sciences Characterization and development of photoactivatable fluorescent proteins for single-molecule-based superresolution imaging Zhuang X, Xie Xs, Dempsey Gt, Moffitt Jr, Wang S mMaple2, mMaple3
2014 Scientific Reports Spectral and structural comparison between bright and dim green fluorescent proteins in Amphioxus Bomati Ek, Haley Je, Noel Jp, Deheyn Dd bfloGFPa1, bfloGFPc1
2014 Biotechnology and Bioengineering Rapid directed evolution of stabilized proteins with cellular high-throughput encapsulation solubilization and screening (CHESS) Scott Dj, Yong Kj usGFP, vsGFP
2015 Nature Methods Fixation-resistant photoactivatable fluorescent proteins for CLEM Looger Ll, Wang Y, Davidson Mw, Hess Hf, Piszczek G, Howe Es, Allen Jr, Patel R, Macklin Jj, Baird Ma, Viswanathan S, Shtengel G, Sun Mg, Paez-Segala Mg mEos4a, mEos4b
2015 ACS Nano Development of a Reversibly Switchable Fluorescent Protein for Super-Resolution Optical Fluctuation Imaging (SOFI) Xu P, Peng J, Xi P, Sun Y, Zhang M, Zeng Z, Chen X, Zhang X Skylan-S
2015 Nature Methods A fast- and positively photoswitchable fluorescent protein for ultralow-laser-power RESOLFT nanoscopy Nagai T, Fujita K, Nakano M, Agetsuma M, Matsuda T, Yamanaka M, Arai Y, Tiwari Dk Kohinoor
2015 Analytical Chemistry High-Speed Multiparameter Photophysical Analyses of Fluorophore Libraries Dean Km, Davis Lm, Lubbeck Jl, Manna P, Friis P, Palmer Ae, Jimenez R mOrange2
2015 Nature Methods A naturally monomeric infrared fluorescent protein for protein labeling in vivo Yu D, Baird Ma, Allen Jr, Howe Es, Klassen Mp, Reade A, Makhijani K, Song Y, Liu S, Murthy Z, Zhang S-Q, Weiner Od, Kornberg Tb, Jan Y-N, Davidson Mw, Shu X mIFP
2015 Biophysical Journal Green Fluorescent Protein with Anionic Tryptophan-Based Chromophore and Long Fluorescence Lifetime Sarkisyan Ks, Goryashchenko As, Lidsky Pv, Gorbachev Da, Bozhanova Ng, Gorokhovatsky Ay, Pereverzeva Ar, Ryumina Ap, Zherdeva Vv, Savitsky Ap, Solntsev Km, Bommarius As, Sharonov Gv, Lindquist Jr, Drobizhev M, Hughes Te, Rebane A, Lukyanov Ka, Mishin As NowGFP EGFP,
2015 Nature Communications A palette of fluorescent proteins optimized for diverse cellular environments Costantini Lm, Baloban M, Markwardt Ml, Rizzo M, Guo F, Verkhusha Vv, Snapp El moxBFP, moxCerulean3, moxGFP, moxNeonGreen, moxVenus, oxBFP, oxCerulean, oxGFP, oxVenus
2015 PLOS ONE Fluorescent Protein Based FRET Pairs with Improved Dynamic Range for Fluorescence Lifetime Measurements Karp M, Tkachenko Nv, Santala V, Mishin As, Sarkisyan Ks, George Abraham B NowGFP
2015 Angewandte Chemie International Edition Rational Structure-Based Design of Bright GFP-Based Complexes with Tunable Dimerization Chen Sl, Wohland T, Jauch R, Jung G, Chee Yc, Lim Cl, Grüter A, Sun G, Eshaghi M vsfGFP-0, vsfGFP-9
2015 Scientific Reports Monomeric Garnet, a far-red fluorescent protein for live-cell STED imaging Ulrich Nienhaus G, Nienhaus K, Ishitsuka Y, Gao P, Prunsche B, Hense A mGarnet
2016 Conference on Lasers and Electro-Optics Time-resolved flow cytometry for lifetime measurements of near-infrared fluorescent proteins Yang Z, Shcherbakova Dm, Verkhusha V, Houston Jp iRFP682
2016 Pathogens Brighter Fluorescent Derivatives of UTI89 Utilizing a Monomeric vGFP Chen S, Mehershahi K, Eshaghi M vsfGFP-9
2016 Scientific Reports Improving brightness and photostability of green and red fluorescent proteins for live cell imaging and FRET reporting Bajar Bt, Wang Es, Lam Aj, Kim Bb, Jacobs Cl, Howe Es, Davidson Mw, Lin Mz, Chu J Clover1.5, dClover2, dClover2 A206K, mClover1.5, mClover3, mRuby3
2016 PLOS ONE Mutagenesis of mNeptune Red-Shifts Emission Spectrum to 681-685 nm Zhang X-E, Wang Db, Deng Jy, Cui Zq, Bi Lj, Zhang Zp, Li Zy mNeptune681, mNeptune684
2016 The Journal of Physical Chemistry Letters Far-Red Emission of mPlum Fluorescent Protein Results from Excited-State Interconversion between Chromophore Hydrogen-Bonding States Jimenez R, Joo T, Lee J, Konold Pe, Yoon E mPlum
2016 Nature Methods Quantitative assessment of fluorescent proteins Piston Dw, Ustione A, Davidson Mw, Kremers G-J, De Gruiter Hm, Lavagnino Z, Allen Jr, Baird Ma, Sell Br, Cranfill Pj mEGFP, mEos4a, mEos4b, mTagBFP2
2016 Nature Biotechnology A bright cyan-excitable orange fluorescent protein facilitates dual-emission microscopy and enhances bioluminescence imaging in vivo Chu J, Oh Y, Sens A, Ataie N, Dana H, Macklin Jj, Laviv T, Welf Es, Dean Km, Zhang F, Kim Bb, Tang Ct, Hu M, Baird Ma, Davidson Mw, Kay Ma, Fiolka R, Yasuda R, Kim Ds, Ng H-L, Lin Mz CyOFP1
2016 Acta Crystallographica Section D Structural Biology Crystal structure of the fluorescent protein fromDendronephthyasp. in both green and photoconverted red forms Pletneva Nv, Pletnev S, Pakhomov Aa, Chertkova Rv, Martynov Vi, Muslinkina L, Dauter Z, Pletnev Vz dendFP
2016 The Journal of Physical Chemistry Letters Fluorescence from Multiple Chromophore Hydrogen-Bonding States in the Far-Red Protein TagRFP675 Jimenez R, Joo T, Verkhusha Vv, Piatkevich Kd, Regmi Ck, Gerstman Bs, Chapagain Pp, Allen Sl, Lee J, Yoon E, Konold Pe TagRFP675
2016 Nature Methods A far-red fluorescent protein evolved from a cyanobacterial phycobiliprotein Rodriguez Ea, Tran Gn, Gross La, Crisp Jl, Shu X, Lin Jy, Tsien Ry R3-2+PCB, smURFP, TDsmURFP, TeAPCα
2016 Nature Communications Bright monomeric near-infrared fluorescent proteins as tags and biosensors for multiscale imaging Shcherbakova Dm, Baloban M, Emelyanov Av, Brenowitz M, Guo P, Verkhusha Vv miRFP670, miRFP670v1, miRFP703, miRFP709 iFP2.0,
2016 Proceedings of the National Academy of Sciences Highly photostable, reversibly photoswitchable fluorescent protein with high contrast ratio for live-cell superresolution microscopy Xu P, Betzig E, Peng J, He W, Li D, Zhang M, Zhang X Skylan-NS
2016 Protein Engineering Design and Selection Blue fluorescent protein derived from the mutated purple chromoprotein isolated from the sea anemone Stichodactyla haddoni Chiang C-Y, Lin C-Y, Chen Y-T, Tsai H-J shBFP, shBFP-N158S/L173I
2016 ACS Chemical Biology Cysteine Sulfoxidation Increases the Photostability of Red Fluorescent Proteins Ren H, Yang B, Ma C, Hu Ys, Wang Pg, Wang L mStable
2016 Proceedings of the National Academy of Sciences Blue protein with red fluorescence Ghosh S, Yu C-L, Ferraro Dj, Sudha S, Pal Sk, Schaefer Wf, Gibson Dt, Ramaswamy S Sandercyanin
2016 Nature Methods Fluorescent indicators for simultaneous reporting of all four cell cycle phases Bajar Bt, Lam Aj, Badiee Rk, Oh Y-H, Chu J, Zhou Xx, Kim N, Kim Bb, Chung M, Yablonovitch Al, Cruz Bf, Kulalert K, Tao Jj, Meyer T, Su X-D, Lin Mz Maroon0.1, mMaroon1
2016 Nature Methods Simultaneous dual-color fluorescence lifetime imaging with novel red-shifted fluorescent proteins Laviv T, Kim Bb, Chu J, Lam Aj, Lin Mz, Yasuda R mCyRFP1
2016 Molecular Biology of the Cell Comparative assessment of fluorescent proteins for in vivo imaging in an animal model system Goldstein B, Kuhn Jr, Ahringer J, Steward A, Higgins Cd, Pani Am, Dickinson Dj, Heppert Jk GFP (S65T), mCherry, mKate2, mNeonGreen, mRuby2, TagRFP-T, YPet
2016 ChemBioChem A Tandem Green-Red Heterodimeric Fluorescent Protein with High FRET Efficiency Wiens Md, Shen Y, Li X, Salem Ma, Smisdom N, Zhang W, Brown A, Campbell Re RRvT
2016 Nature Methods mScarlet: a bright monomeric red fluorescent protein for cellular imaging Bindels Ds, Haarbosch L, Van Weeren L, Postma M, Wiese Ke, Mastop M, Aumonier S, Gotthard G, Royant A, Hink Ma, Gadella Twj mRed7, mRed7Q1, mRed7Q1S1, mRed7Q1S1BM, mScarlet, mScarlet-H, mScarlet-I mApple, mKate2, mRuby2, TagRFP-T
2016 Acta Crystallographica Section D Structural Biology Structural analysis of the bright monomeric yellow-green fluorescent protein mNeonGreen obtained by directed evolution Royant A, Shaner Nc, Lambert Gg, Pasquier H, De Sanctis D, Von Stetten D, Gotthard G, Clavel D mNeonGreen
2017 Chemical Communications moxDendra2: an inert photoswitchable protein for oxidizing environments Snapp El, Verkhusha Vv, Morano Nc, Kaberniuk Aa moxDendra2, moxEos3.2 Dendra2
2017 Chemical Communications A far-red emitting fluorescent marker protein, mGarnet2, for microscopy and STED nanoscopy Matela G, Gao P, Guigas G, Eckert Af, Nienhaus K, Ulrich Nienhaus G mGarnet2
2017 PLOS ONE Engineering of mCherry variants with long Stokes shift, red-shifted fluorescence, and low cytotoxicity Campbell Re, Shaner Nc, Wu J, Chen Y, Shen Y mCherry1.5, mCherry2, RDSmCherry0.1, RDSmCherry0.2, RDSmCherry0.5, RDSmCherry1
2017 Nature Protocols Diverse protocols for correlative super-resolution fluorescence imaging and electron microscopy of chemically fixed samples Hess Hf, Looger Ll, Taraska Jw, Van Engelenburg Sb, Xu Cs, Wang Y, Sun Mg, Sochacki Ka, Shtengel G, Paez-Segala Mg, Kopek Bg mEos4a, mEos4b
2017 The Journal of Physical Chemistry Letters Blue-Shifted Green Fluorescent Protein Homologues Are Brighter than Enhanced Green Fluorescent Protein under Two-Photon Excitation Drobizhev M, Hughes Te, Shaner Nc, Salih A, Lambert Gg, Campbell Re, Tran Tm, Molina Rs mNeonGreen
2017 Cell Chemical Biology How to Increase Brightness of Near-Infrared Fluorescent Proteins in Mammalian Cells Verkhusha Vv, Oliinyk Os, Shemetov Aa miRFP670
2017 Robust and Bright Genetically Encoded Fluorescent Markers for Highlighting Structures and Compartments in Mammalian Cells Goedhart J, Okada Y, Gadella Twj, Joosen L, Batenburg Kl, Van Der Niet S, Van Bommel N, Postma M, Mastop M, Chertkova Ao mNeonGreen, mScarlet-I, mTurquoise2
2017 Scientific Reports Characterization of a spectrally diverse set of fluorescent proteins as FRET acceptors for mTurquoise2 Goedhart J, Gadella Twj, Postma M, Shaner Nc, Bindels Ds, Mastop M mCherry, mNeonGreen, mScarlet-I, mTurquoise2
2018 The Analyst Spying on protein interactions in living cells with reconstituted scarlet light Sun Y, Hou Y, Xue B, Ding M, Wang S mAmetrine, mScarlet-I
2018 Integrative Biology Directed evolution of excited state lifetime and brightness in FusionRed using a microfluidic sorter Jimenez R, Palmer Ae, Lo Mn, Simpson Dm, Friis P, Mukherjee S, Hung S-T, Manna P FR-1, FusionRed-M FusionRed
2018 Integrative Biology Enhancing fluorescent protein photostability through robot-assisted photobleaching Campbell Re, Chen Y, Hoffmann F, Wiens Md Citrine2
2018 Scientific Reports A Novel Ultra-Stable, Monomeric Green Fluorescent Protein For Direct Volumetric Imaging of Whole Organs Using CLARITY Griffin Mdw, Bathgate Rad, Petrou S, Haidar M, Challis Lm, Veldhuis Na, Wimmer Vc, Yong Kj, Gunn Nj, Scott Dj muGFP Superfolder GFP, usGFP
2018 PLOS ONE Optimization of mNeonGreen for Homo sapiens increases its fluorescent intensity in mammalian cells Tanida-Miyake E, Koike M, Uchiyama Y, Tanida I mNeonGreen
2018 Structure Crystal Structure of Green Fluorescent Protein Clover and Design of Clover-Based Redox Sensors Campbell Bc, Petsko Ga, Liu Cf Clover
2018 Nature Chemical Biology A robotic multidimensional directed evolution approach applied to fluorescent voltage reporters Piatkevich Kd, Jung Ee, Straub C, Linghu C, Park D, Suk H-J, Hochbaum Dr, Goodwin D, Pnevmatikakis E, Pak N, Kawashima T, Yang C-T, Rhoades Jl, Shemesh O, Asano S, Yoon Y-G, Freifeld L, Saulnier Jl, Riegler C, Engert F, Hughes T, Drobizhev M, Szabo B, Ahrens Mb, Flavell Sw, Sabatini Bl, Boyden Es miRFP
2018 Cell Chemical Biology Acid-Tolerant Monomeric GFP from Olindias formosa Nagai T, Matsuda T, Sakurai K, Nakashima R, Ma Y, Shinoda H dfGFP, Gamillus, Gamillus0.1, Gamillus0.2, Gamillus0.3, Gamillus0.4, Gamillus0.5
2018 Nature Chemical Biology Direct multiplex imaging and optogenetics of Rho GTPases enabled by near-infrared FRET Hodgson L, Verkhusha Vv, Huisman Tm, Cox Cammer N, Shcherbakova Dm miRFP720
2018 Biophysical Journal Photophysical Behavior of mNeonGreen, an Evolutionarily Distant Green Fluorescent Protein Weidemann T, Schwille P, Schultz P, Petrov Ep, Steiert F mNeonGreen
2018 ACS Chemical Biology A spontaneously blinking fluorescent protein for simple single laser super-resolution live cell imaging Nagai T, Matsuda T, Nakano M, Fujiwara S, Ogami Y, Takauchi H, Arai Y SPOON
2018 Scientific Reports Optimization of sample preparation and green color imaging using the mNeonGreen fluorescent protein in bacterial cells for photoactivated localization microscopy Shin Jy, Bramkamp M, Jung K, Gruber S, Cramer K, Feddersen H, Stockmar I Dronpa, mNeonGreen
2018 Nature Methods Fast reversibly photoswitching red fluorescent proteins for live-cell RESOLFT nanoscopy Testa I, Mishin As, Verkhusha Vv, Lukyanov Ka, Chudakov Dm, Dreier J, Bodén A, Gurskaya Ng, Kotlobay Aa, Bozhanova Ng, Shemyakina Ii, Faro Ar, Serebrovskaya Eo, Pennacchietti F rsFusionRed1, rsFusionRed2, rsFusionRed3
2018 Scientific Reports Optimal fluorescent protein tags for quantifying protein oligomerization in living cells Chiantia S, Herrmann A, Petazzi Ra, Zühlke B, Luckner M, Dunsing V mCherry2
2018 Journal of Physics D: Applied Physics The 2018 correlative microscopy techniques roadmap Zifarelli G, Yuan H, Winterhalter M, Wagner R, Vogel Mw, Verkade P, Schwarz Us, Schaap Iat, Salditt T, Roeffaers Mbj, Reutens Dc, Rehfeldt F, Peckys Db, Parekh V, Liv N, Kusch J, Kurniawan N, Klumpermann J, Kaufman R, Janssen Kpf, Hoogenboom Jp, Hofkens J, Grunewald K, Giepmans Bng, Gerritsen H, Fritzsche M, Franck C, Eggeling C, Debroye E, De Pablo Pj, De Jonge N, Collinson L, Colin-York H, Brending N, Bhamidimarri Sp, Ando T mEos4a, mEos4b
2018 Cell Chemical Biology Imaging-Based Screening Platform Assists Protein Engineering Griesbeck O, Portugues R, Erdogan M, Kist Am, Ng D, Fabritius A mCarmine
2018 Journal of the American Chemical Society Identification of PAmKate as a Red Photoactivatable Fluorescent Protein for Cryogenic Super-Resolution Imaging Moerner We, Shapiro L, Saurabh S, Wang J, Sartor Am, Dahlberg Pd PAmKate
2018 Scientific Reports moxMaple3: a Photoswitchable Fluorescent Protein for PALM and Protein Highlighting in Oxidizing Cellular Environments Snapp El, Verkhusha Vv, Mohr Ma, Kaberniuk Aa moxMaple3 mMaple3
2018 Nature Communications Near-infrared STED nanoscopy with an engineered bacterial phytochrome Jakobs S, Hell Sw, Jensen Na, Ta H, Kamper M SNIFP
2018 Protein Science Spectral and structural analysis of a red fluorescent protein from Acropora digitifera Nam Kh, Hwang Ky, Kim Se AdRed