FPbase Reference List

This is a table of all articles referenced on at least one page at FPbase. Use the search field to search for any text in the table, including protein name, author name, journal name, publication year, or title contents. 1˚ proteins are intended to be proteins that were introduced by that reference, whereas 2˚ proteins were further characterized by that reference. Click on any title, author, or protein, to see more info for that item at FPbase, or click on the "Link" button to go to the publisher's website.

Link Year Journal Title Authors 1˚ Proteins 2˚ Proteins
1972 Journal of Bacteriology Isolation and Properties of a Fluorescent Compound, Factor <sub>420</sub> , from <i>Methanobacterium</i> Strain M.o.H Cheeseman P, Toms-Wood A, Wolfe Rs
1981 FEMS Microbiology Letters Factor F<sub>420</sub>degradation in<i>Methanobacterium thermoautotrophicum</i>during exposure to oxygen Schã¶Nheit P, Keweloh H, Thauer Rk
1992 Gene Primary structure of the Aequorea victoria green-fluorescent protein Prasher Dc, Eckenrode Vk, Ward Ww, Prendergast Fg, Cormier Mj avGFP
1994 Science Green fluorescent protein as a marker for gene expression Chalfie M, Tu Y, Euskirchen G, Ward W, Prasher D avGFP
1994 Proceedings of the National Academy of Sciences Wavelength mutations and posttranslational autoxidation of green fluorescent protein. Heim R, Prasher Dc, Tsien Ry CFP, H9, P11, P4, P9 ECFP,
1995 Nature Biotechnology Red-Shifted Excitation Mutants of the Green Fluorescent Protein Delagrave S, Hawtin Re, Silva Cm, Yang Mm, Youvan Dc RSGFP1, RSGFP2, RSGFP3, RSGFP4, RSGFP6, RSGFP7
1995 Nature Improved green fluorescence Heim R, Cubitt Ab, Tsien Ry GFP (S65T) avGFP,
1996 Gene FACS-optimized mutants of the green fluorescent protein (GFP) Cormack Bp, Valdivia Rh, Falkow S EGFP, GFPmut2, GFPmut3
1996 Gene Fluorescence resonance energy transfer between blue-emitting and red-shifted excitation derivatives of the green fluorescent protein Mitra Rd, Silva Cm, Youvan Dc BFP5
1996 Current Biology Engineering green fluorescent protein for improved brightness, longer wavelengths and fluorescence resonance energy transfer Heim R, Tsien Ry BFP, ECFP, P4-1, W2, W7 GFP (S65T),
1996 Nature Biotechnology Improved Green Fluorescent Protein by Molecular Evolution Using DNA Shuffling Crameri A, Whitehorn Ea, Tate E, Stemmer Wpc &alpha;GFP
1996 Science Crystal Structure of the Aequorea victoria Green Fluorescent Protein Orm  M, Cubitt Ab, Kallio K, Gross La, Tsien Ry, Remington Sj 10B, 11, 5B, 6C, EYFP avGFP,
1996 Nature Biotechnology The molecular structure of green fluorescent protein Yang F, Moss Lg, Phillips Gn avGFP
1996 Biochemical and Biophysical Research Communications An Enhanced Green Fluorescent Protein Allows Sensitive Detection of Gene Transfer in Mammalian Cells Zhang G, Gurtu V, Kain Sr EGFP
1996 Nucleic Acids Research Optimized Codon Usage and Chromophore Mutations Provide Enhanced Sensitivity with the Green Fluorescent Protein Yang T-T, Cheng L, Kain Sr EGFP
1997 Microbiology Yeast-enhanced green fluorescent protein (yEGFP): a reporter of gene expression in Candida albicans Cormack Bp, Bertram G, Egerton M, Gow Nar, Falkow S, Brown Ajp yEGFP
1997 Nature Structural & Molecular Biology The structural basis for spectral variations in green fluorescent protein Palm Gj, Zdanov A, Gaitanaris Ga, Stauber R, Pavlakis Gn, Wlodawer A sg11, sg12, sg25, sg42, sg50
1997 Biochemistry Crystal Structure and Photodynamic Behavior of the Blue Emission Variant Y66H/Y145F of Green Fluorescent Protein† Wachter Rm, King Ba, Heim R, Kallio K, Tsien Ry, Boxer Sg, Remington Sj P4
1997 Biophysical Journal Use of the green fluorescent protein and its mutants in quantitative fluorescence microscopy Patterson Gh, Knobel Sm, Sharif Wd, Kain Sr, Piston Dw &alpha;GFP, avGFP, EBFP, EGFP, GFP (S65T)
1997 Journal of Biological Chemistry Deletions of theAequorea victoriaGreen Fluorescent Protein Define the Minimal Domain Required for Fluorescence Li X, Zhang G, Ngo N, Zhao X, Kain Sr, Huang C-C avGFP
1998 Methods in Cell Biology Chapter 2: Understanding Structure—Function Relationships in the Aequorea victoria Green Fluorescent Protein Cubitt Ab, Woollenweber La, Heim R Emerald, mEmerald, P4-3E, Sapphire, Topaz ECFP, EGFP, H9, P4, W1C
1998 Journal of Biological Chemistry Improved Fluorescence and Dual Color Detection with Enhanced Blue and Green Variants of the Green Fluorescent Protein Yang T-T, Sinai P, Green G, Kitts Pa, Chen Y-T, Lybarger L, Chervenak R, Patterson Gh, Piston Dw, Kain Sr EBFP BFP5,
1998 Annual Review of Biochemistry THE GREEN FLUORESCENT PROTEIN Tsien Ry W1C avGFP, EBFP, ECFP, EGFP, mEGFP, mEmerald, P4, Topaz
1998 Nature Visualizing secretion and synaptic transmission with pH-sensitive green fluorescent proteins Miesenböck G, De Angelis Da, Rothman Je pHluorin, ecliptic, pHluorin, ratiometric
1998 Structure Structural basis of spectral shifts in the yellow-emission variants of green fluorescent protein Wachter Rm, Elsliger M-A, Kallio K, Hanson Gt, Remington Sj
1998 BioTechniques Two-Color Green Fluorescent Protein Time-Lapse Imaging Ellenberg J, Lippincott-Schwartz J, Presley Jf W7
1999 Proceedings of the National Academy of Sciences Dynamic and quantitative Ca2+ measurements using improved cameleons Miyawaki A, Griesbeck O, Heim R, Tsien Ry EYFP-Q69K
1999 Nature Biotechnology Rapid protein-folding assay using green fluorescent protein Waldo Gs, Standish Bm, Berendzen J, Terwilliger Tc Folding Reporter GFP
1999 Proceedings of the IEEE Toward unique identifiers Paskin N
1999 Nature Biotechnology Erratum: Fluorescent proteins from nonbioluminescent Anthozoa species Matz Mv, Fradkov Af, Labas Ya, Savitsky Ap, Zaraisky Ag, Markelov Ml, Lukyanov Sa amFP486, cFP484, dsFP483, DsRed, zFP538, ZsGreen
2000 FEBS Letters Green-fluorescent protein mutants with altered fluorescence excitation spectra Ehrig T, O'Kane Dj, Prendergast Fg GFP(E222G)
2000 Journal of Biological Chemistry Natural Animal Coloration Can Be Determined by a Nonfluorescent Green Fluorescent Protein Homolog Lukyanov Ka, Fradkov Af, Gurskaya Ng, Matz Mv, Labas Ya, Savitsky Ap, Markelov Ml, Zaraisky Ag, Zhao X, Fang Y, Tan W, Lukyanov Sa asulCP
2000 Nucleic Acids Research Directed evolution of green fluorescent protein by a new versatile PCR strategy for site-directed and semi-random mutagenesis Sawano A CGFP, ECGFP
2000 Biophysical Journal The Use of pHluorins for Optical Measurements of Presynaptic Activity Sankaranarayanan S, De Angelis D, Rothman Je, Ryan Ta superecliptic pHluorin
2000 Proceedings of the National Academy of Sciences Biochemistry, mutagenesis, and oligomerization of DsRed, a red fluorescent protein from coral Baird Gs, Zacharias Da, Tsien Ry DsRed
2000 Proceedings of the National Academy of Sciences The structure of the chromophore within DsRed, a red fluorescent protein from coral Gross La, Baird Gs, Hoffman Rc, Baldridge Kk, Tsien Ry DsRed
2000 Science "Fluorescent Timer": Protein That Changes Color with Time Terskikh A DsRed-Timer
2000 Nature Structural Biology The structural basis for red fluorescence in the tetrameric GFP homolog DsRed. Ranganathan R, Wall Ma, Socolich M DsRed
2000 Proceedings of the National Academy of Sciences Cracks in the beta -can: Fluorescent proteins from Anemonia sulcata (Anthozoa, Actinaria) Wiedenmann J, Elke C, Spindler K-D, Funke W asCP562, asFP499 asulCP
2001 Journal of Agricultural and Food Chemistry Steady-State and Time-Resolved Spectroscopy of F420 Extracted from Methanogen Cells and Its Utility as a Marker for Fecal Contamination Ashby Kd, Casey Ta, Rasmussen Ma, Petrich Jw
2001 Proceedings of the National Academy of Sciences Circularly permuted green fluorescent proteins engineered to sense Ca2+ Nagai T, Sawano A, Park Es, Miyawaki A cpEYFP(V68L/Q69K)
2001 Journal of Biological Chemistry Reducing the Environmental Sensitivity of Yellow Fluorescent Protein Griesbeck O, Baird Gs, Campbell Re, Zacharias Da, Tsien Ry Citrine, cpCitrine mCitrine
2001 Journal of Biological Chemistry Alternative Cyclization in GFP-like Proteins Family Martynov Vi, Savitsky Ap, Martynova Ny, Savitsky Pa, Lukyanov Ka, Lukyanov Sa asulCP
2001 FEBS Letters GFP-like chromoproteins as a source of far-red fluorescent proteins Gurskaya Ng, Fradkov Af, Terskikh A, Matz Mv, Labas Ya, Martynov Vi, Yanushevich Yg, Lukyanov Ka, Lukyanov Sa cgigCP, cpasCP, gtenCP, HcRed, hcriCP
2001 The EMBO Journal Shedding light on disulfide bond formation: engineering a redox switch in green fluorescent protein Ostergaard H avGFP523
2001 Chemical Physics Multiphoton molecular spectroscopy and excited-state dynamics of enhanced green fluorescent protein (EGFP): acid–base specificity Heikal Aa, Hess St, Webb Ww EGFP
2001 FEBS Letters Aequoreagreen fluorescent protein Inouye S, Tsuji Fi avGFP
2002 Nature Biotechnology A variant of yellow fluorescent protein with fast and efficient maturation for cell-biological applications Nagai T, Ibata K, Park Es, Kubota M, Mikoshiba K, Miyawaki A EYFP-F46L, SEYFP, Venus
2002 Nature Biotechnology Rapidly maturing variants of the Discosoma red fluorescent protein (DsRed) Bevis Bj, Glick Bs DsRed-Express, DsRed.T3, DsRed.T4 DsRed, DsRed2,
2002 BMC Biochemistry Interconversion of Anthozoa GFP-like fluorescent and non-fluorescent proteins by mutagenesis. Bulina Me, Chudakov Dm, Mudrik Nn, Lukyanov Ka DsRed-NF
2002 Marine Biotechnology Bioluminescence of Aequorea macrodactyla, a Common Jellyfish Species in the East China Sea Xia N-S, Luo W-X, Zhang J, Xie X-Y, Yang H-J, Li S-W, Chen M, Ng M-H TagCFP
2002 Comparative Biochemistry and Physiology Part B: Biochemistry and Molecular Biology Separation of highly fluorescent proteins by SDS-PAGE in Acroporidae corals Papina M, Sakihama Y, Bena C, Van Woesik R, Yamasaki H atenFP
2002 Proceedings of the National Academy of Sciences Diversity and evolution of the green fluorescent protein family Labas Ya, Gurskaya Ng, Yanushevich Yg, Fradkov Af, Lukyanov Ka, Lukyanov Sa, Matz Mv cgigGFP, dendFP, dis2RFP, dis3GFP, hcriGFP, mcavGFP, mcavRFP, ptilGFP, rfloGFP, rfloRFP, scubGFP1, scubGFP2, zoan2RFP amFP486, asulCP, cFP484, cgigCP, cpasCP, DsRed, gtenCP, hcriCP, zFP538, ZsGreen
2002 Biochemistry Proposed structure for coenzyme F<sub>420</sub> from methanobacterium Eirich Ld, Vogels Gd, Wolfe Rs
2002 Science Partitioning of Lipid-Modified Monomeric GFPs into Membrane Microdomains of Live Cells Zacharias Da mCitrine, mEGFP, mEYFP EYFP,
2002 Proceedings of the National Academy of Sciences A monomeric red fluorescent protein Campbell Re, Tour O, Palmer Ae, Steinbach Pa, Baird Gs, Zacharias Da, Tsien Ry dimer1, dimer2, mRFP1, tdimer2(12)
2002 Proceedings of the National Academy of Sciences A far-red fluorescent protein with fast maturation and reduced oligomerization tendency from Entacmaea quadricolor (Anthozoa, Actinaria) Wiedenmann J, Schenk A, Rocker C, Girod A, Spindler K-D, Nienhaus Gu eqFP611
2002 Science A Photoactivatable GFP for Selective Photolabeling of Proteins and Cells Patterson Gh mPA-GFP, PA-GFP
2002 Proceedings of the National Academy of Sciences An optical marker based on the UV-induced green-to-red photoconversion of a fluorescent protein Ando R, Hama H, Yamamoto-Hino M, Mizuno H, Miyawaki A Kaede
2002 Neuron Transmission of Olfactory Information between Three Populations of Neurons in the Antennal Lobe of the Fly Ng M, Roorda Rd, Lima Sq, Zemelman Bv, Morcillo P, Miesenböck G superecliptic pHluorin
2002 Journal of Biological Chemistry Crystal Structure of Venus, a Yellow Fluorescent Protein with Improved Maturation and Reduced Environmental Sensitivity Rekas A, Alattia J-R, Nagai T, Miyawaki A, Ikura M Venus
2002 Biochemical Journal Far-red fluorescent tag for protein labelling Fradkov Af, Verkhusha Vv, Staroverov Db, Bulina Me, Yanushevich Yg, Martynov Vi, Lukyanov S, Lukyanov Ka HcRed-Tandem HcRed,
2002 Neuron Rod Cyclic Nucleotide-Gated Channels Have a Stoichiometry of Three CNGA1 Subunits and One CNGB1 Subunit Zheng J, Trudeau Mc, Zagotta Wn Enhanced Cyan-Emitting GFP
2002 Biochemistry Green Fluorescent Protein Variants as Ratiometric Dual Emission pH Sensors. 1. Structural Characterization and Preliminary Application† Hanson Gt, Mcananey Tb, Park Es, Rendell Mep, Yarbrough Dk, Chu S, Xi L, Boxer Sg, Montrose Mh, Remington Sj deGFP1, deGFP2, deGFP3, deGFP4
2003 BMC Biotechnology Efficiently folding and circularly permuted variants of the Sapphire mutant of GFP. Zapata-Hommer O, Griesbeck O cpT-Sapphire 174-173, T-Sapphire Sapphire,
2003 Nature Biotechnology Kindling fluorescent proteins for precise in vivo photolabeling Chudakov Dm, Belousov Vv, Zaraisky Ag, Novoselov Vv, Staroverov Db, Zorov Db, Lukyanov S, Lukyanov Ka KFP1
2003 Limnology and Oceanography Green-fluorescent proteins in Caribbean corals Mazel Ch, Lesser Mp, Gorbunov My, Barry Tm, Farrell Jh, Wyman Kd, Falkowski Pg mcavFP
2003 Journal of Biological Chemistry Chromophore Environment Provides Clue to “Kindling Fluorescent Protein” Riddle Chudakov Dm, Feofanov Av, Mudrik Nn, Lukyanov S, Lukyanov Ka asulCP, cgigCP, hcriCP
2003 Biochemical and Biophysical Research Communications A naturally enhanced green fluorescent protein from magnificent sea anemone (Heteractis magnifica) and its functional analysis Tu H, Xiong Q, Zhen S, Zhong X, Peng L, Chen H, Jiang X, Liu W, Yang W, Wei J, Dong M, Wu W, Xu A hmGFP
2003 Acta Crystallographica Section D Biological Crystallography The production, purification and crystallization of a pocilloporin pigment from a reef-forming coral Beddoe T, Ling M, Dove S, Hoegh-Guldberg O, Devenish Rj, Prescott M, Rossjohn J Rtms5
2003 Structure The 2.2 Å Crystal Structure of a Pocilloporin Pigment Reveals a Nonplanar Chromophore Conformation Prescott M, Ling M, Beddoe T, Oakley Aj, Dove S, Hoegh-Guldberg O, Devenish Rj, Rossjohn J Rtms5
2003 Biochemical Journal Hetero-oligomeric tagging diminishes non-specific aggregation of target proteins fused with Anthozoa fluorescent proteins Bulina Me, Verkhusha Vv, Staroverov Db, Chudakov Dm, Lukyanov Ka M355NA
2003 Molecular Biology and Evolution Molecular Basis and Evolutionary Origins of Color Diversity in Great Star Coral Montastraea cavernosa (Scleractinia: Faviida) Kelmanson Iv mc1, mc2, mc3, mc4, mc5, mc6
2003 Journal of Biological Chemistry A Green-emitting Fluorescent Protein fromGalaxeidaeCoral and Its Monomeric Version for Use in Fluorescent Labeling Karasawa S, Araki T, Yamamoto-Hino M, Miyawaki A AzamiGreen, mAzamiGreen
2003 Biochemical Journal A colourless green fluorescent protein homologue from the non-fluorescent hydromedusa Aequorea coerulescens and its fluorescent mutants Gurskaya Ng, Fradkov Af, Pounkova Ni, Staroverov Db, Bulina Me, Yanushevich Yg, Labas Ya, Lukyanov S, Lukyanov Ka aceGFP-h
2003 Journal of Biological Chemistry A Purple-blue Chromoprotein from Goniopora tenuidens Belongs to the DsRed Subfamily of GFP-like Proteins Martynov Vi, Maksimov Bi, Martynova Ny, Pakhomov Aa, Gurskaya Ng, Lukyanov Sa gtenCP
2003 Proceedings of the National Academy of Sciences Channelrhodopsin-2, a directly light-gated cation-selective membrane channel Nagel G, Szellas T, Huhn W, Kateriya S, Adeishvili N, Berthold P, Ollig D, Hegemann P, Bamberg E Channelrhodopsin2
2004 Biological Chemistry Probing the role of tryptophans in Aequorea victoria green fluorescent proteins with an expanded genetic code Budisa N, Pal Pp, Alefelder S, Birle P, Krywcun T, Rubini M, Wenger W, Bae Jh, Steiner T avGFP480, avGFP509, avGFP510
2004 Journal of Biological Chemistry Investigating Mitochondrial Redox Potential with Redox-sensitive Green Fluorescent Protein Indicators Hanson Gt, Aggeler R, Oglesbee D, Cannon M, Capaldi Ra, Tsien Ry, Remington Sj roGFP1, roGFP1-R1, roGFP1-R8, roGFP2
2004 Nature Biotechnology An improved cyan fluorescent protein variant useful for FRET Rizzo Ma, Springer Gh, Granada B, Piston Dw Cerulean, D10, ECFP H148D Citrine, ECFP
2004 Yeast GFP as a quantitative reporter of gene regulation inCandida albicans Barelle Cj, Manson Cl, Maccallum Dm, Odds Fc, Gow Nar, Brown Ajp yEGFP
2004 ChemBioChem Crystallographic Evidence for Isomeric Chromophores in 3-Fluorotyrosyl-Green Fluorescent Protein Bae Jh, Paramita Pal P, Moroder L, Huber R, Budisa N (3-F)Tyr-EGFP, avGFP514
2004 Molecular Biology and Evolution GFP-like Proteins as Ubiquitous Metazoan Superfamily: Evolution of Functional Features and Structural Complexity Shagin Da, Barsova Ev, Yanushevich Yg, Fradkov Af, Lukyanov Ka, Labas Ya, Semenova Tn, Ugalde Ja, Meyers A, Nunez Jm, Widder Ea, Lukyanov Sa, Matz Mv anm1GFP1, anm1GFP2, anm2CP, Jred, laesGFP, pdae1GFP, phiYFP, pmeaGFP1, pmeaGFP2, ppluGFP1, ppluGFP2
2004 Chemistry &amp; Biology Common Pathway for the Red Chromophore Formation in Fluorescent Proteins and Chromoproteins Verkhusha Vv, Chudakov Dm, Gurskaya Ng, Lukyanov S, Lukyanov Ka cgigCP
2004 Biotechnology Progress Flow Cytometric Screening of cDNA Expression Libraries for Fluorescent Proteins Bessette Ph, Daugherty Ps alajGFP1, alajGFP2, alajGFP3
2004 Biochemical Journal Cyan-emitting and orange-emitting fluorescent proteins as a donor/acceptor pair for fluorescence resonance energy transfer Karasawa S, Araki T, Nagai T, Mizuno H, Miyawaki A KO, MiCy, mKO, mMiCy
2004 Comparative Biochemistry and Physiology Part C: Toxicology & Pharmacology Cloning of anthozoan fluorescent protein genes Carter Rw, Schmale Mc, Gibbs Pdl DspR1, DstC1, Fpaagar, Fpag_frag, Fpcondchrom, FPmann, FPmcavgr7.7, FPrfl2.3, McaG1, McaG1ea, McaG2, MfaG1, PdaC1
2004 FEBS Letters Biophysical characterization of natural and mutant fluorescent proteins cloned from zooxanthellate corals Sun Y, Castner Ew, Lawson Cl, Falkowski Pg mcCFP, mcRFP, mmGFP
2004 PLANT PHYSIOLOGY Use of the Fluorescent Timer DsRED-E5 as Reporter to Monitor Dynamics of Gene Activity in Plants Mirabella R DsRed-Timer
2004 Nature Biotechnology Photoswitchable cyan fluorescent protein for protein tracking Chudakov Dm, Verkhusha Vv, Staroverov Db, Souslova Ea, Lukyanov S, Lukyanov Ka PS-CFP
2004 Proceedings of the National Academy of Sciences EosFP, a fluorescent marker protein with UV-inducible green-to-red fluorescence conversion Wiedenmann J, Ivanchenko S, Oswald F, Schmitt F, Rocker C, Salih A, Spindler K-D, Nienhaus Gu d1EosFP, d2EosFP, EosFP, mEosFP
2004 Proceedings of the National Academy of Sciences Evolution of new nonantibody proteins via iterative somatic hypermutation Wang L, Jackson Wc, Steinbach Pa, Tsien Ry mPlum, mRaspberry mRFP1.2
2004 Science Regulated Fast Nucleocytoplasmic Shuttling Observed by Reversible Protein Highlighting Ando R 22G, Dronpa
2004 Nature Biotechnology Improved monomeric red, orange and yellow fluorescent proteins derived from Discosoma sp. red fluorescent protein Shaner Nc, Campbell Re, Steinbach Pa, Giepmans Bng, Palmer Ae, Tsien Ry dTomato, mBanana, mCherry, mHoneydew, mOFP.T.12, mOFP.T.8, mOrange, mRFP1.1, mRFP1.3, mRFP1.4, mRFP1.5, mStrawberry, mTangerine, tdTomato dimer2, DsRed, DsRed-Express, mRFP1,
2005 Journal of Biomedical Optics Red fluorescent protein eqFP611 and its genetically engineered dimeric variants Wiedenmann J, Vallone B, Renzi F, Nienhaus K, Ivanchenko S, RöCker C, Nienhaus Gu eqFP611 V124T eqFP611
2005 Nature Biotechnology Protein tagging and detection with engineered self-assembling fragments of green fluorescent protein Cabantous S, Terwilliger Tc, Waldo Gs spGFP 11, spGFP1-10
2005 Biochemistry zFP538, a Yellow-Fluorescent Protein fromZoanthus, Contains a Novel Three-Ring Chromophore†,‡ Remington Sj, Wachter Rm, Yarbrough Dk, Branchaud B, Anderson Dc, Kallio K, Lukyanov Ka zFP538
2005 Biophysical Journal High-Contrast Imaging of Fluorescent Protein FRET by Fluorescence Polarization Microscopy Rizzo Ma, Piston Dw mCerulean
2005 Biochemistry Understanding GFP Chromophore Biosynthesis:  Controlling Backbone Cyclization and Modifying Post-translational Chemistry†,‡ Barondeau Dp, Kassmann Cj, Tainer Ja, Getzoff Ed GFPhal
2005 Nature Biotechnology Evolutionary optimization of fluorescent proteins for intracellular FRET Nguyen Aw, Daugherty Ps CFP4, CyPet, YFP3, YPet
2005 EMBO reports Semi-rational engineering of a coral fluorescent protein into an efficient highlighter Tsutsui H, Karasawa S, Shimizu H, Nukina N, Miyawaki A KikG, KikGR1
2005 Journal of Microscopy Two-photon excitation and emission spectra of the green fluorescent protein variants ECFP, EGFP and EYFP Spiess E, Bestvater F, Heckel-Pompey A, Toth K, Hacker M, Stobrawa G, Feurer T, Wotzlaw C, Berchner-Pfannschmidt U, Porwol T, Acker H EYFP
2005 Journal of Molecular Biology The 2.1Å Crystal Structure of the Far-red Fluorescent Protein HcRed: Inherent Conformational Flexibility of the Chromophore Wilmann Pg, Petersen J, Pettikiriarachchi A, Buckle Am, Smith Sc, Olsen S, Perugini Ma, Devenish Rj, Prescott M, Rossjohn J HcRed
2005 Proceedings of the National Academy of Sciences From The Cover: Reversible single-molecule photoswitching in the GFP-like fluorescent protein Dronpa Habuchi S, Ando R, Dedecker P, Verheijen W, Mizuno H, Miyawaki A, Hofkens J Dronpa
2005 Biochemistry Crystallographic Structures ofDiscosomaRed Fluorescent Protein with Immature and Mature Chromophores:  Linking Peptide BondTrans−CisIsomerization and Acylimine Formation in Chromophore Maturation†,‡ Tubbs Jl, Tainer Ja, Getzoff Ed
2005 Biochemical and Biophysical Research Communications Maturation efficiency, trypsin sensitivity, and optical properties of Arg96, Glu222, and Gly67 variants of green fluorescent protein Sniegowski Ja, Phail Me, Wachter Rm avGFP454
2005 Japanese Journal of Applied Physics Tunneling Spectroscopy Analysis of Hexachloro-Fluorescein Phosphoramidite Fluorescent Dye Attached to Deoxyribonucleic Acid Kawahara T, Takahashi T, Tanaka H, Kawai T
2005 Proceedings of the National Academy of Sciences Crystal structures and mutational analysis of amFP486, a cyan fluorescent protein from Anemonia majano Henderson Jn, Remington Sj amFP495, amFP506, amFP515 amFP486,
2005 Nature Methods A guide to choosing fluorescent proteins Shaner Nc, Steinbach Pa, Tsien Ry
2005 Biochemical Journal Far-red fluorescent proteins evolved from a blue chromoprotein fromActinia equina Shkrob Ma, Yanushevich Yg, Chudakov Dm, Gurskaya Ng, Labas Ya, Poponov Sy, Mudrik Nn, Lukyanov S, Lukyanov Ka aeBlue, AQ14, AQ143, AsRed2
2005 Nature Biotechnology Engineering and characterization of a superfolder green fluorescent protein Pédelacq J-D, Cabantous S, Tran T, Terwilliger Tc, Waldo Gs Superfolder BFP, Superfolder CFP, Superfolder GFP, Superfolder YFP cgfTagRFP, Folding Reporter GFP,
2005 Nature Biotechnology A genetically encoded photosensitizer Bulina Me, Chudakov Dm, Britanova Ov, Yanushevich Yg, Staroverov Db, Chepurnykh Tv, Merzlyak Em, Shkrob Ma, Lukyanov S, Lukyanov Ka KillerRed
2006 Microscopy Research and Technique Photoswitchable cyan fluorescent protein as a FRET donor Souslova Ea, Chudakov Dm phiYFP, PS-CFP
2006 ChemPhysChem A Comparison of the Fluorescence Dynamics of Single Molecules of a Green Fluorescent Protein: One- versus Two-Photon Excitation Cotlet M, Goodwin Pm, Waldo Gs, Werner Jh Superfolder GFP
2006 Journal of the American Chemical Society Structural Evidence for an Enolate Intermediate in GFP Fluorophore Biosynthesis Barondeau Dp, Tainer Ja, Getzoff Ed BFPsol
2006 Proceedings of the National Academy of Sciences A dark yellow fluorescent protein (YFP)-based Resonance Energy-Accepting Chromoprotein (REACh) for Förster resonance energy transfer with GFP Ganesan S, Ameer-Beg Sm, Ng Ttc, Vojnovic B, Wouters Fs REACh1, REACh2
2006 Proceedings of the National Academy of Sciences Imaging cellular signals in the heart in vivo: Cardiac expression of the high-signal Ca2+ indicator GCaMP2 Tallini Yn, Ohkura M, Choi B-R, Ji G, Imoto K, Doran R, Lee J, Plan P, Wilson J, Xin H-B, Sanbe A, Gulick J, Mathai J, Robbins J, Salama G, Nakai J, Kotlikoff Mi GCaMP2
2006 Nature Biotechnology Engineering of a monomeric green-to-red photoactivatable fluorescent protein induced by blue light Gurskaya Ng, Verkhusha Vv, Shcheglov As, Staroverov Db, Chepurnykh Tv, Fradkov Af, Lukyanov S, Lukyanov Ka Dendra, Dendra2
2006 Nature Biotechnology A fluorescent variant of a protein from the stony coral Montipora facilitates dual-color single-laser fluorescence cross-correlation spectroscopy Kogure T, Karasawa S, Araki T, Saito K, Kinjo M, Miyawaki A dKeima, dKeima570, mKeima, Montipora sp. #20, Montipora sp. #20-9115, tKeima
2006 Biochemistry Cyan and Yellow Super Fluorescent Proteins with Improved Brightness, Protein Folding, and FRET Förster Radius†,‡ Kremers G-J, Goedhart J, Van Munster Eb, Gadella Twj mVenus, SCFP1, SCFP2, SCFP3A, SCFP3B, SYFP2 ECFP, EYFP, EYFP-Q69K, Venus
2006 Biochemistry Concatenation of Cyan and Yellow Fluorescent Proteins for Efficient Resonance Energy Transfer† Shimozono S, Hosoi H, Mizuno H, Fukano T, Tahara T, Miyawaki A Cy11.5
2006 Gene A novel yellowish-green fluorescent protein from the marine copepod, Chiridius poppei, and its use as a reporter protein in HeLa cells Masuda H, Takenaka Y, Yamaguchi A, Nishikawa S, Mizuno H CpYGFP
2006 Microscopy and Microanalysis Optimization of Pairings and Detection Conditions for Measurement of FRET between Cyan and Yellow Fluorescent Proteins Rizzo Ma, Springer G, Segawa K, Zipfel Wr, Piston Dw mCerulean, mCerulean3
2006 Biochemistry Structure and Reactivity of the Chromophore of a GFP-like Chromoprotein from <i>Condylactis gigantea</i> Pakhomov Aa, Pletneva Nv, Balashova Ta, Martynov Vi cgigCP
2006 Journal of Molecular Biology The 2.1Å Crystal Structure of copGFP, a Representative Member of the Copepod Clade Within the Green Fluorescent Protein Superfamily Wilmann Pg, Battad J, Petersen J, Wilce Mcj, Dove S, Devenish Rj, Prescott M, Rossjohn J ppluGFP2
2006 Marine Biotechnology Variants of Green Fluorescent Protein GFPxm Luo W-X, Cheng T, Guan B-Q, Li S-W, Miao J, Zhang J, Xia N-S GFPxm16, GFPxm161, GFPxm162, GFPxm163, GFPxm18, GFPxm181uv, GFPxm18uv, GFPxm19, GFPxm191uv, GFPxm19uv, OFPxm, ShG24
2006 Plant Cell Reports A red fluorescent protein, DsRed2, as a visual reporter for transient expression and stable transformation in soybean Nishizawa K, Kita Y, Kitayama M, Ishimoto M DsRed2
2006 Biochemistry Novel Chromophores and Buried Charges Control Color in mFruits†,‡ Shu X, Shaner Nc, Yarbrough Ca, Tsien Ry, Remington Sj mCherry, mOrange
2006 Nature Methods An improved mRFP1 adds red to bimolecular fluorescence complementation Jach G, Pesch M, Richter K, Frings S, Uhrig Jf mRFP1-Q66C, mRFP1-Q66S, mRFP1-Q66T
2006 Nature Protocols Chromophore-assisted light inactivation (CALI) using the phototoxic fluorescent protein KillerRed Bulina Me, Lukyanov Ka, Britanova Ov, Onichtchouk D, Lukyanov S, Chudakov Dm KillerRed
2006 EMBO reports Structural basis for the fast maturation of Arthropoda green fluorescent protein Evdokimov Ag, Pokross Me, Egorov Ns, Zaraisky Ag, Yampolsky Iv, Merzlyak Em, Shkoporov An, Sander I, Lukyanov Ka, Chudakov Dm TurboGFP, TurboGFP-V197L
2006 Nature Protocols Evolving proteins in mammalian cells using somatic hypermutation Wang L, Tsien Ry mRFP1.2
2006 Biochemistry Exploring Chromophore−Protein Interactions in Fluorescent Protein cmFP512 fromCerianthus membranaceus:  X-ray Structure Analysis and Optical Spectroscopy† Nienhaus K, Renzi F, Vallone B, Wiedenmann J, Nienhaus Gu
2006 Journal of Molecular Biology The 1.7 Å Crystal Structure of Dronpa: A Photoswitchable Green Fluorescent Protein Wilmann Pg, Turcic K, Battad Jm, Wilce Mcj, Devenish Rj, Prescott M, Rossjohn J Dronpa
2006 Nature Biotechnology Blue fluorescent proteins with enhanced brightness and photostability from a structurally targeted library Mena Ma, Treynor Tp, Mayo Sl, Daugherty Ps Azurite, BFP.A5
2006 Biophysical Journal Chromophore-Protein Interactions in the Anthozoan Green Fluorescent Protein asFP499 Nienhaus K, Renzi F, Vallone B, Wiedenmann J, Nienhaus Gu asFP499
2006 Biological Procedures Online Practical three color live cell imaging by widefield microscopy Xia J, Kim Shh, Macmillan S, Truant R PS-CFP2
2006 Journal of Biological Chemistry Structural Characterization of a Blue Chromoprotein and Its Yellow Mutant from the Sea Anemone Cnidopus Japonicus Chan Mcy, Karasawa S, Mizuno H, Bosanac I, Ho D, Privé Gg, Miyawaki A, Ikura M cjBlue
2006 Biochemical Journal Directed evolution of a monomeric, bright and photostable version ofClavulariacyan fluorescent protein: structural characterization and applications in fluorescence imaging Ai H-, Henderson Jn, Remington Sj, Campbell Re dTFP0.1, dTFP0.2, mECFP, mTFP0.3, mTFP0.4, mTFP0.5, mTFP0.6, mTFP0.7, mTFP0.8, mTFP0.9, mTFP1 dsFP483, mCerulean, mTFP*,
2007 Microscopy Research and Technique Fluorescence lifetime imaging of coral fluorescent proteins Cox G, Matz M, Salih A amilFP490, amilFP504, amilFP513, amilFP593
2007 BMC Biotechnology Single fluorescent protein-based Ca2+ sensors with increased dynamic range Souslova Ea, Belousov Vv, Lock Jg, Strömblad S, Kasparov S, Bolshakov Ap, Pinelis Vg, Labas Ya, Lukyanov S, Mayr Lm, Chudakov Dm GCaMP2
2007 Protein Engineering, Design and Selection The creation of a novel fluorescent protein by guided consensus engineering Dai M, Fisher He, Temirov J, Kiss C, Phipps Me, Pavlik P, Werner Jh, Bradbury Arm CGP
2007 Biochemical Journal 1.8 Å bright-state structure of the reversibly switchable fluorescent protein Dronpa guides the generation of fast switching variants Stiel Ac, Trowitzsch S, Weber G, Andresen M, Eggeling C, Hell Sw, Jakobs S, Wahl Mc rsFastLime Dronpa-2,
2007 Biochemistry Improved Green and Blue Fluorescent Proteins for Expression in Bacteria and Mammalian Cells†,‡ Kremers G-J, Goedhart J, Van Den Heuvel Dj, Gerritsen Hc, Gadella Twj SBFP1, SBFP2, SGFP1, SGFP2, SGFP2(206A), SGFP2(E222Q), SGFP2(T65G)
2007 Biochemical and Biophysical Research Communications Structural characterization of the photoswitchable fluorescent protein Dronpa-C62S Nam K-H, Kwon Oy, Sugiyama K, Lee W-H, Kim Yk, Song Hk, Kim Ee, Park S-Y, Jeon H, Hwang Ky Dronpa-C62S Dronpa,
2007 Proceedings of the National Academy of Sciences Structural basis for reversible photobleaching of a green fluorescent protein homologue Henderson Jn, Ai H-, Campbell Re, Remington Sj mTFP0.7
2007 Biochemistry Exploration of New Chromophore Structures Leads to the Identification of Improved Blue Fluorescent Proteins† Ai H-, Shaner Nc, Cheng Z, Tsien Ry, Campbell Re EBFP1.2, EBFP1.5, EBFP2, mBlueberry1, mBlueberry2, mKalama1
2007 Marine Biotechnology Characterization of Novel Orange Fluorescent Protein Cloned from Cnidarian Tube Anemone Cerianthus sp. Ip Dt-M, Wong K-B, Wan Dc-C OFP
2007 Biophysical Journal Highlighted Generation of Fluorescence Signals Using Simultaneous Two-Color Irradiation on Dronpa Mutants Ando R, Flors C, Mizuno H, Hofkens J, Miyawaki A Dronpa-2, Dronpa-3
2007 Nature Methods Bright monomeric red fluorescent protein with an extended fluorescence lifetime Merzlyak Em, Goedhart J, Shcherbo D, Bulina Me, Shcheglov As, Fradkov Af, Gaintzeva A, Lukyanov Ka, Lukyanov S, Gadella Twj, Chudakov Dm eqFP578, TagRFP, TurboRFP eqFP611, mCherry,
2007 Protein Science An experimental study of GFP-based FRET, with application to intrinsically unstructured proteins Ohashi T, Galiacy Sd, Briscoe G, Erickson Hp CyPet, YPet
2007 Biophysical Journal Spectroscopic and Structural Study of Proton and Halide Ion Cooperative Binding to GFP Arosio D, Garau G, Ricci F, Marchetti L, Bizzarri R, Nifosì R, Beltram F avGFP
2007 ChemBioChem Enhanced Sensitivity of FRET-Based Protease Sensors by Redesign of the GFP Dimerization Interface Vinkenborg Jl, Evers Th, Reulen Swa, Meijer Ew, Merkx M CyPet, YPet
2007 Nature Protocols Tracking intracellular protein movements using photoswitchable fluorescent proteins PS-CFP2 and Dendra2 Chudakov Dm, Lukyanov S, Lukyanov Ka Dendra2, PS-CFP2
2007 Nature Methods Bright far-red fluorescent protein for whole-body imaging Shcherbo D, Merzlyak Em, Chepurnykh Tv, Fradkov Af, Ermakova Gv, Solovieva Ea, Lukyanov Ka, Bogdanova Ea, Zaraisky Ag, Lukyanov S, Chudakov Dm Katushka, mKate
2007 Biochemistry X-ray Structure of Cerulean GFP:  A Tryptophan-Based Chromophore Useful for Fluorescence Lifetime Imaging†,‡ Malo Gd, Pouwels Lj, Wang M, Weichsel A, Montfort Wr, Rizzo Ma, Piston Dw, Wachter Rm Cerulean
2007 Marine Biotechnology Dynamic Regulation of Fluorescent Proteins from a Single Species of Coral Kao H-T, Sturgis S, Desalle R, Tsai J, Davis D, Gruber Df, Pieribone Va mcFP497, mcFP503, mcFP506
2007 Protein Engineering, Design and Selection Structural rearrangements near the chromophore influence the maturation speed and brightness of DsRed variants Strongin De, Bevis B, Khuong N, Downing Me, Strack Rl, Sundaram K, Glick Bs, Keenan Rj DsRed.M1
2007 Marine Biotechnology Gene Expression of a Green Fluorescent Protein Homolog as a Host-Specific Biomarker of Heat Stress Within a Reef-Building Coral Smith-Keune C, Dove S A1a
2007 Journal of Molecular Biology Crystal Structures of the Luciferase and Green Fluorescent Protein from Renilla reniformis Loening Am, Fenn Td, Gambhir Ss rrGFP
2007 Journal of Cell Science Advances in fluorescent protein technology Shaner Nc, Patterson Gh, Davidson Mw YPet
2008 Biology Direct A family of GFP-like proteins with different spectral properties in lancelet Branchiostoma floridae Baumann D, Cook M, Ma L, Mushegian A, Sanders E, Schwartz J, Yu Cr LanFP1, LanFP2
2008 BMC Biology Hue-shifted monomeric variants of Clavularia cyan fluorescent protein: identification of the molecular determinants of color and applications in fluorescence imaging Ai H-, Olenych Sg, Wong P, Davidson Mw, Campbell Re G1, G2, G3, mTFP1-Y67H, mTFP1-Y67W, mWasabi
2008 Cell Visualizing Spatiotemporal Dynamics of Multicellular Cell-Cycle Progression Sakaue-Sawano A, Kurokawa H, Morimura T, Hanyu A, Hama H, Osawa H, Kashiwagi S, Fukami K, Miyata T, Miyoshi H, Imamura T, Ogawa M, Masai H, Miyawaki A mKO2
2008 PLoS ONE Synthetic Biology of Proteins: Tuning GFPs Folding and Stability with Fluoroproline Steiner T, Hess P, Bae Jh, Wiltschi B, Moroder L, Budisa N Superfolder GFP
2008 Chemistry & Biology Optimized and Far-Red-Emitting Variants of Fluorescent Protein eqFP611 Kredel S, Nienhaus K, Oswald F, Wolff M, Ivanchenko S, Cymer F, Jeromin A, Michel Fj, Spindler K-D, Heilker R, Nienhaus Gu, Wiedenmann J d-RFP618, RFP611, RFP618, RFP630, RFP637, RFP639, td-RFP611, td-RFP639 eqFP611,
2008 Marine Biotechnology Spectral Diversity of Fluorescent Proteins from the Anthozoan Corynactis californica Schnitzler Ce, Keenan Rj, Mccord R, Matysik A, Christianson Lm, Haddock Shd ccalGFP1, ccalGFP3, ccalOFP1, ccalRFP1, ccalRFP2, ccalYFP1, rfloGFP2, rrenGFP amFP486, asFP499, dendFP, DsRed, EosFP, eqFP611, gtenCP, Kaede, McaG2, mcavRFP, mcCFP, ptilGFP, zoan2RFP, ZsGreen
2008 Protein Science Design of a highly specific and noninvasive biosensor suitable for real-time in vivo imaging of mercury (II) uptake Chapleau Rr, Blomberg R, Ford Pc, Sagermann M eGFP203C, eGFP205C
2008 Nature Methods Fluorescent protein FRET pairs for ratiometric imaging of dual biosensors Ai H-, Hazelwood Kl, Davidson Mw, Campbell Re mAmetrine, mT-Sapphire
2008 Nature Methods Improving the photostability of bright monomeric orange and red fluorescent proteins Shaner Nc, Lin Mz, Mckeown Mr, Steinbach Pa, Hazelwood Kl, Davidson Mw, Tsien Ry mApple, mOrange2, TagRFP-T mEGFP,
2008 Brain Cell Biology Highly sensitive and quantitative FRET–FLIM imaging in single dendritic spines using improved non-radiative YFP Murakoshi H, Lee S-J, Yasuda R sREACh
2008 The Journal of Immunology Sequential Binding of Cytosolic Phox Complex to Phagosomes through Regulated Adaptor Proteins: Evaluation Using the Novel Monomeric Kusabira-Green System and Live Imaging of Phagocytosis Ueyama T, Kusakabe T, Karasawa S, Kawasaki T, Shimizu A, Son J, Leto Tl, Miyawaki A, Saito N mKG
2008 Photosynthesis Research Bacteriophytochromes in anoxygenic photosynthetic bacteria Giraud E, Verméglio A RpBphP6
2008 Plant Physiology Combination of Novel Green Fluorescent Protein Mutant TSapphire and DsRed Variant mOrange to Set Up a Versatile in Planta FRET-FLIM Assay Bayle V, Nussaume L, Bhat Ra T-Sapphire
2008 Nature Methods Improving membrane voltage measurements using FRET with new fluorescent proteins Tsutsui H, Karasawa S, Okamura Y, Miyawaki A mKO&kappa;, mUkG
2008 PLoS ONE Diversity and Evolution of Coral Fluorescent Proteins Alieva No, Konzen Ka, Field Sf, Meleshkevitch Ea, Hunt Me, Beltran-Ramirez V, Miller Dj, Wiedenmann J, Salih A, Matz Mv aacuCP, aacuGFP1, aacuGFP2, aeurGFP, afraGFP, ahyaCP, amilCP, amilGFP, anobCFP1, anobCFP2, anobGFP, dhorGFP, dhorRFP, eechGFP1, eechGFP2, eechGFP3, eechRFP, efasCFP, efasGFP, eforCP, fabdGFP, gdjiCP, gfasCP, gfasGFP, meffCFP, meffCP, meffGFP, meffRFP, meleCFP, meleRFP, mmilCFP, plamGFP, pporGFP, pporRFP, psamCFP, sarcGFP, scubRFP, spisCP, stylCP, stylGFP amilFP490, amilFP513, amilFP593,
2008 Marine Ecology Progress Series Blue light regulation of host pigment in reef-building corals D’Angelo C, Denzel A, Vogt A, Matz Mv, Oswald F, Salih A, Nienhaus Gu, Wiedenmann J amilFP484, amilFP497, amilFP512, amilFP597, apulCP584, apulFP483, shysCP562
2008 Journal of Biological Chemistry A Crystallographic Study of Bright Far-Red Fluorescent Protein mKate Reveals pH-inducedcis-transIsomerization of the Chromophore Pletnev S, Shcherbo D, Chudakov Dm, Pletneva N, Merzlyak Em, Wlodawer A, Dauter Z, Pletnev V mKate S158A mKate,
2008 Nature Biotechnology Photoswitchable fluorescent proteins enable monochromatic multilabel imaging and dual color fluorescence nanoscopy Andresen M, Stiel Ac, Fölling J, Wenzel D, Schönle A, Egner A, Eggeling C, Hell Sw, Jakobs S bsDronpa, Padron, Padron(star) rsFastLime
2008 Biophysical Journal Generation of Monomeric Reversibly Switchable Red Fluorescent Proteins for Far-Field Fluorescence Nanoscopy Stiel Ac, Andresen M, Bock H, Hilbert M, Schilde J, Schönle A, Eggeling C, Egner A, Hell Sw, Jakobs S rsCherry, rsCherryRev
2008 Cloning and Stem Cells Transgenic-Cloned Pigs Systemically Expressing Red Fluorescent Protein, Kusabira-Orange Matsunari H, Onodera M, Tada N, Mochizuki H, Karasawa S, Haruyama E, Nakayama N, Saito H, Ueno S, Kurome M, Miyawaki A, Nagashima H KO
2008 Proceedings of the National Academy of Sciences Alteration of citrine structure by hydrostatic pressure explains the accompanying spectral shift Barstow B, Ando N, Kim Cu, Gruner Sm Citrine
2008 Chemistry & Biology Conversion of Red Fluorescent Protein into a Bright Blue Probe Subach Om, Gundorov Is, Yoshimura M, Subach Fv, Zhang J, Grüenwald D, Souslova Ea, Chudakov Dm, Verkhusha Vv HcRed1-Blue, TagBFP, TagGFP, TagGFP2 Azurite, EBFP2, HcRed,
2008 Nature Methods A noncytotoxic DsRed variant for whole-cell labeling Strack Rl, Strongin De, Bhattacharyya D, Tao W, Berman A, Broxmeyer He, Keenan Rj, Glick Bs DsRed-Express2, DsRed-Max DsRed-Express, TurboRFP
2008 Proceedings of the National Academy of Sciences Structural characterization of IrisFP, an optical highlighter undergoing multiple photo-induced transformations Adam V, Lelimousin M, Boehme S, Desfonds G, Nienhaus K, Field Mj, Wiedenmann J, Mcsweeney S, Nienhaus Gu, Bourgeois D IrisFP
2008 PLoS ONE A Green Fluorescent Protein with Photoswitchable Emission from the Deep Sea Vogt A, D'Angelo C, Oswald F, Denzel A, Mazel Ch, Matz Mv, Ivanchenko S, Nienhaus Gu, Wiedenmann J cerFP505
2008 Structure Structural Basis for Calcium Sensing by GCaMP2 Wang Q, Shui B, Kotlikoff Mi, Sondermann H cEGFP GCaMP2
2008 Proceedings of the National Academy of Sciences The photoreversible fluorescent protein iLOV outperforms GFP as a reporter of plant virus infection Chapman S, Faulkner C, Kaiserli E, Garcia-Mata C, Savenkov Ei, Roberts Ag, Oparka Kj, Christie Jm iLov
2008 PLoS ONE mKikGR, a Monomeric Photoswitchable Fluorescent Protein Habuchi S, Tsutsui H, Kochaniak Ab, Miyawaki A, Van Oijen Am mKikGR
2009 BMC Biotechnology Noncytotoxic orange and red/green derivatives of DsRed-Express2 for whole-cell labeling Strack Rl, Bhattacharyya D, Glick Bs, Keenan Rj E2-Orange, E2-Red/Green
2009 Molecular Biotechnology DSN Depletion is a Simple Method to Remove Selected Transcripts from cDNA Populations Bogdanova Ea, Shagina Ia, Mudrik E, Ivanov I, Amon P, Vagner Ll, Lukyanov Sa, Shagin Da zGFP, zRFP
2009 Nature Chemical Biology Monomeric fluorescent timers that change color from blue to red report on cellular trafficking Subach Fv, Subach Om, Gundorov Is, Morozova Ks, Piatkevich Kd, Cuervo Am, Verkhusha Vv Fast-FT, Medium-FT, Slow-FT
2009 Nature Methods Photoactivatable mCherry for high-resolution two-color fluorescence microscopy Subach Fv, Patterson Gh, Manley S, Gillette Jm, Lippincott-Schwartz J, Verkhusha Vv PAmCherry1, PAmCherry2, PAmCherry3
2009 Nature Methods A bright and photostable photoconvertible fluorescent protein Mckinney Sa, Murphy Cs, Hazelwood Kl, Davidson Mw, Looger Ll mEos2
2009 PLoS ONE mRuby, a Bright Monomeric Red Fluorescent Protein for Labeling of Subcellular Structures Kredel S, Oswald F, Nienhaus K, Deuschle K, Röcker C, Wolff M, Heilker R, Nienhaus Gu, Wiedenmann J mRuby
2009 Protein Engineering Design and Selection Directed evolution of an extremely stable fluorescent protein Kiss C, Temirov J, Chasteen L, Waldo Gs, Bradbury Arm eCGP123
2009 Biophysical Journal Characterization of Engineered Channelrhodopsin Variants with Improved Properties and Kinetics Lin Jy, Lin Mz, Steinbach P, Tsien Ry Channelrhodopsin2
2009 Biochemical Journal Far-red fluorescent tags for protein imaging in living tissues Shcherbo D, Murphy Cs, Ermakova Gv, Solovieva Ea, Chepurnykh Tv, Shcheglov As, Verkhusha Vv, Pletnev Vz, Hazelwood Kl, Roche Pm, Lukyanov S, Zaraisky Ag, Davidson Mw, Chudakov Dm mKate2, tdKatushka2
2009 Journal of the American Chemical Society Structure and Mechanism of the Photoactivatable Green Fluorescent Protein Henderson Jn, Gepshtein R, Heenan Jr, Kallio K, Huppert D, Remington Sj PA-GFP
2009 Nature Methods An ultramarine fluorescent protein with increased photostability and pH insensitivity Tomosugi W, Matsuda T, Tani T, Nemoto T, Kotera I, Saito K, Horikawa K, Nagai T Sirius
2009 Science Mammalian Expression of Infrared Fluorescent Proteins Engineered from a Bacterial Phytochrome Shu X, Royant A, Lin Mz, Aguilera Ta, Lev-Ram V, Steinbach Pa, Tsien Ry DrCBD, iFP1.4
2009 Journal of Biological Chemistry Red Fluorescent Protein pH Biosensor to Detect Concentrative Nucleoside Transport Johnson De, Ai H-, Wong P, Young Jd, Campbell Re, Casey Jr mNectarine
2009 Biochemistry Structural Basis of Enhanced Photoconversion Yield in Green Fluorescent Protein-like Protein Dendra2 Adam V, Nienhaus K, Bourgeois D, Nienhaus Gu
2009 Biochemistry Crystal Structure of a New Cyan Fluorescent Protein and Its Hue-Shifted Variants, Kikuchi A, Fukumura E, Karasawa S, Shiro Y, Miyawaki A KCY, KCY-G4219, KCY-G4219-38L, KCY-R1, KCY-R1-158A, KCY-R1-38H, KCY-R1-38L
2009 FEBS Letters Structural basis for the phototoxicity of the fluorescent protein KillerRed Carpentier P, Violot S, Blanchoin L, Bourgeois D A44-KR, KillerRed
2009 Journal of the American Chemical Society Reverse pH-Dependence of Chromophore Protonation Explains the Large Stokes Shift of the Red Fluorescent Protein mKeima Violot S, Carpentier P, Blanchoin L, Bourgeois D mKeima
2009 Biosensors and Bioelectronics A novel far-red bimolecular fluorescence complementation system that allows for efficient visualization of protein interactions under physiological conditions Chu J, Zhang Z, Zheng Y, Yang J, Qin L, Lu J, Huang Z-L, Zeng S, Luo Q mLumin mKate S158A,
2009 Biochemistry A Rapidly Maturing Far-Red Derivative of DsRed-Express2 for Whole-Cell Labeling Strack Rl, Hein B, Bhattacharyya D, Hell Sw, Keenan Rj, Glick Bs E2-Crimson
2009 Journal of Biological Chemistry Structural Basis for Phototoxicity of the Genetically Encoded Photosensitizer KillerRed Pletnev S, Gurskaya Ng, Pletneva Nv, Lukyanov Ka, Chudakov Dm, Martynov Vi, Popov Vo, Kovalchuk Mv, Wlodawer A, Dauter Z, Pletnev V KillerRed
2009 Molecular Biology and Evolution Novel Internal Regions of Fluorescent Proteins Undergo Divergent Evolutionary Patterns Gruber Df, Desalle R, Lienau Ek, Tchernov D, Pieribone Va, Kao H-T acanFP, echFP, echiFP, fcFP, fcomFP, meruFP, montFP, psupFP, scleFP1, scleFP2, sympFP
2009 Journal of the American Chemical Society Excited State Proton Transfer in the Red Fluorescent Protein mKeima Henderson Jn, Osborn Mf, Koon N, Gepshtein R, Huppert D, Remington Sj mKeima
2009 Biochemistry Intrinsic Dynamics in ECFP and Cerulean Control Fluorescence Quantum Yield Lelimousin M, Noirclerc-Savoye M, Lazareno-Saez C, Paetzold B, Le Vot S, Chazal R, Macheboeuf P, Field Mj, Bourgeois D, Royant A Cerulean, ECFP
2009 Chemistry & Biology Autofluorescent Proteins with Excitation in the Optical Window for Intravital Imaging in Mammals Lin Mz, Mckeown Mr, Ng H-L, Aguilera Ta, Shaner Nc, Campbell Re, Adams Sr, Gross La, Ma W, Alber T, Tsien Ry mGrape1, mGrape2, mGrape3, mKate M41G S158C, mKate S158C, mNeptune, Neptune mKate S158A,
2010 Photochemical & Photobiological Sciences Higher resolution in localization microscopy by slower switching of a photochromic protein Mizuno H, Dedecker P, Ando R, Fukano T, Hofkens J, Miyawaki A PDM1-4
2010 Photochemical & Photobiological Sciences Green-fluorescent protein from the bioluminescent jellyfish Clytia gregaria: cDNA cloning, expression, and characterization of novel recombinant protein Markova Sv, Burakova Lp, Frank La, Golz S, Korostileva Ka, Vysotski Es cgreGFP
2010 Molecular Biology of the Cell Age-dependent Preferential Dense-Core Vesicle Exocytosis in Neuroendocrine Cells Revealed by Newly Developed Monomeric Fluorescent Timer Protein Tsuboi T, Kitaguchi T, Karasawa S, Fukuda M, Miyawaki A mK-GO DsRed-Timer,
2010 Journal of Biological Engineering A synthetic three-color scaffold for monitoring genetic regulation and noise Cox R, Dunlop Mj, Elowitz Mb mVenus-Q69M
2010 Nature Methods Bright cyan fluorescent protein variants identified by fluorescence lifetime screening Goedhart J, Van Weeren L, Hink Ma, Vischer Noe, Jalink K, Gadella Twj mTurquoise, mTurquoise-DR, mTurquoise-GL, mTurquoise-GV, mTurquoise-RA, Turquoise-GL
2010 Journal of the American Chemical Society Understanding Blue-to-Red Conversion in Monomeric Fluorescent Timers and Hydrolytic Degradation of Their Chromophores Pletnev S, Subach Fv, Dauter Z, Wlodawer A, Verkhusha Vv Blue102
2010 Proceedings of the National Academy of Sciences Monomeric red fluorescent proteins with a large Stokes shift Piatkevich Kd, Hulit J, Subach Om, Wu B, Abdulla A, Segall Je, Verkhusha Vv LSS-mKate1, LSS-mKate2
2010 Journal of Biological Chemistry Structural Evidence for a Dehydrated Intermediate in Green Fluorescent Protein Chromophore Biosynthesis Pletneva Nv, Pletnev Vz, Lukyanov Ka, Gurskaya Ng, Goryacheva Ea, Martynov Vi, Wlodawer A, Dauter Z, Pletnev S aceGFP, aceGFP-G222E-Y220L
2010 Journal of Biological Chemistry Molecular Basis of the Light-driven Switching of the Photochromic Fluorescent Protein Padron Brakemann T, Weber G, Andresen M, Groenhof G, Stiel Ac, Trowitzsch S, Eggeling C, Grubmüller H, Hell Sw, Wahl Mc, Jakobs S Padron0.9
2010 FEBS Journal A new bright green-emitting fluorescent protein - engineered monomeric and dimeric forms Ilagan Rp, Rhoades E, Gruber Df, Kao H-T, Pieribone Va, Regan L dVFP, mVFP, mVFP1, VFP
2010 Journal of the American Chemical Society Bright Monomeric Photoactivatable Red Fluorescent Protein for Two-Color Super-Resolution sptPALM of Live Cells Subach Fv, Patterson Gh, Renz M, Lippincott-Schwartz J, Verkhusha Vv PATagRFP, PATagRFP1297, PATagRFP1314
2010 Biochemical and Biophysical Research Communications Novel fluorescent protein from Hydnophora rigida possess cyano emission Bokhari H, Smith C, Veerendra K, Sivaraman J, Sikaroodi M, Gillevet P HriCFP HriGFP
2010 Journal of the American Chemical Society Chromophore Formation in DsRed Occurs by a Branched Pathway Strack Rl, Strongin De, Mets L, Glick Bs, Keenan Rj DsRed
2010 Biophysical Journal Far-Red Fluorescent Protein Excitable with Red Lasers for Flow Cytometry and Superresolution STED Nanoscopy Morozova Ks, Piatkevich Kd, Gould Tj, Zhang J, Bewersdorf J, Verkhusha Vv TagRFP657
2010 Nature Methods A photoactivatable marker protein for pulse-chase imaging with superresolution Fuchs J, Böhme S, Oswald F, Hedde Pn, Krause M, Wiedenmann J, Nienhaus Gu mIrisFP
2010 PLoS ONE Very Bright Green Fluorescent Proteins from the Pontellid Copepod Pontella mimocerami Hunt Me, Scherrer Mp, Ferrari Fd, Matz Mv pmimGFP1, pmimGFP2
2010 Journal of Molecular Biology A Monomeric Photoconvertible Fluorescent Protein for Imaging of Dynamic Protein Localization Hoi H, Shaner Nc, Davidson Mw, Cairo Cw, Wang J, Campbell Re dClavGR1.6, mClavGR1, mClavGR1.1, mClavGR1.8, mClavGR2
2010 Nature Methods Near-infrared fluorescent proteins Shcherbo D, Shemiakina Ii, Ryabova Av, Luker Ke, Schmidt Bt, Souslova Ea, Gorodnicheva Tv, Strukova L, Shidlovskiy Km, Britanova Ov, Zaraisky Ag, Lukyanov Ka, Loschenov Vb, Luker Gd, Chudakov Dm eqFP650, eqFP670, Katushka-9-5
2010 Journal of Biotechnology Data storage based on photochromic and photoconvertible fluorescent proteins Adam V, Mizuno H, Grichine A, Hotta J-, Yamagata Y, Moeyaert B, Nienhaus Gu, Miyawaki A, Bourgeois D, Hofkens J IrisFP
2010 Proceedings of the National Academy of Sciences Generation of longer emission wavelength red fluorescent proteins using computationally designed libraries Chica Ra, Moore Mm, Allen Bd, Mayo Sl mRojoA, mRojoB, mRouge
2010 ChemBioChem Engineering Protein Sequence Composition for Folding Robustness Renders Efficient Noncanonical Amino acid Incorporations Nagasundarapandian S, Merkel L, Budisa N, Govindan R, Ayyadurai N, Sriram S, Yun H, Lee S-G esGFP
2010 Nature A dimorphic pheromone circuit in Drosophila from sensory input to descending output Ruta V, Datta Sr, Vasconcelos Ml, Freeland J, Looger Ll, Axel R C3PA-GFP
2011 Photochemical & Photobiological Sciences Multi-colored homologs of the green fluorescent protein from hydromedusa Obelia sp. Aglyamova Gv, Hunt Me, Modi Ck, Matz Mv obeCFP, obeGFP, obeYFP
2011 Advances in Bioscience and Biotechnology pHluorin2: an enhanced, ratiometric, pH-sensitive green florescent protein Mahon Mj pHluorin2
2011 Journal of Biophotonics From EosFP to mIrisFP: structure-based development of advanced photoactivatable marker proteins of the GFP-family Wiedenmann J, Gayda S, Adam V, Oswald F, Nienhaus K, Bourgeois D, Nienhaus Gu IrisFP
2011 PLoS ONE An Improved Cerulean Fluorescent Protein with Enhanced Brightness and Reduced Reversible Photoswitching Markwardt Ml, Kremers G-J, Kraft Ca, Ray K, Cranfill Pjc, Wilson Ka, Day Rn, Wachter Rm, Davidson Mw, Rizzo Ma mCerulean2, mCerulean2.D3, mCerulean2.N, mCerulean2.N(T65S), mCerulean3, mCerulean.B, mCerulean.B2, mCerulean.B24 mTurquoise
2011 PLoS Biology A Genetically Encoded Tag for Correlated Light and Electron Microscopy of Intact Cells, Tissues, and Organisms Shu X, Lev-Ram V, Deerinck Tj, Qi Y, Ramko Eb, Davidson Mw, Jin Y, Ellisman Mh, Tsien Ry miniSOG
2011 Nature Methods Two-photon absorption properties of fluorescent proteins Drobizhev M, Makarov Ns, Tillo Se, Hughes Te, Rebane A Citrine, DsRed2, E2-Crimson, EBFP1.2, EBFP1.5, EBFP2, ECFP, EGFP, eqFP650, eqFP670, G1, G3, Katushka, mAmetrine, mBanana, mBlueberry1, mCerulean, mCherry, mCitrine, mGrape3, mKalama1, mKate, mKate2, mKO&kappa;, mNeptune, mOrange, mPlum, mRaspberry, mRFP1, mTangerine, mTFP0.7, mTFP1, mWasabi, Neptune, TagBFP, TagGFP2, TagRFP, tdKatushka2, tdTomato
2011 PLoS ONE Circular Permutation of Red Fluorescent Proteins Shui B, Wang Q, Lee F, Byrnes Lj, Chudakov Dm, Lukyanov Sa, Sondermann H, Kotlikoff Mi cp-mKate
2011 Journal of the American Chemical Society Imaging Intracellular pH in Live Cells with a Genetically Encoded Red Fluorescent Protein Sensor Tantama M, Hung Yp, Yellen G pHRed
2011 Protein Science Crystallographic study of red fluorescent protein eqFP578 and its far-red variant Katushka reveals opposite pH-induced isomerization of chromophore Pletneva Nv, Pletnev Vz, Shemiakina Ii, Chudakov Dm, Artemyev I, Wlodawer A, Dauter Z, Pletnev S Katushka
2011 Nature Biotechnology Bright and stable near-infrared fluorescent protein for in vivo imaging Filonov Gs, Piatkevich Kd, Ting L-M, Zhang J, Kim K, Verkhusha Vv iRFP713
2011 Nature Methods A photoswitchable orange-to-far-red fluorescent protein, PSmOrange Subach Om, Patterson Gh, Ting L-M, Wang Y, Condeelis Js, Verkhusha Vv PSmOrange
2011 Biophysical Journal Superresolution Imaging of Multiple Fluorescent Proteins with Highly Overlapping Emission Spectra in Living Cells Gunewardene Ms, Subach Fv, Gould Tj, Penoncello Gp, Gudheti Mv, Verkhusha Vv, Hess St PAmKate
2011 Nature Diffraction-unlimited all-optical imaging and writing with a photochromic GFP Grotjohann T, Testa I, Leutenegger M, Bock H, Urban Nt, Lavoie-Cardinal F, Willig Ki, Eggeling C, Jakobs S, Hell Sw rsEGFP
2011 Nature Biotechnology A reversibly photoswitchable GFP-like protein with fluorescence excitation decoupled from switching Brakemann T, Stiel Ac, Weber G, Andresen M, Testa I, Grotjohann T, Leutenegger M, Plessmann U, Urlaub H, Eggeling C, Wahl Mc, Hell Sw, Jakobs S Dreiklang
2011 Chemistry & Biology Rational Design of Photoconvertible and Biphotochromic Fluorescent Proteins for Advanced Microscopy Applications Adam V, Moeyaert B, David Cc, Mizuno H, Lelimousin M, Dedecker P, Ando R, Miyawaki A, Michiels J, Engelborghs Y, Hofkens J Dendra2-M159A, mEosFP-F173S, mEosFP-M159A, NijiFP Dendra2, mEosFP,
2011 Journal of the American Chemical Society The Nature of Transient Dark States in a Photoactivatable Fluorescent Protein Roy A, Field Mj, Adam V, Bourgeois D IrisFP
2011 PLoS ONE An Enhanced Monomeric Blue Fluorescent Protein with the High Chemical Stability of the Chromophore Subach Om, Cranfill Pj, Davidson Mw, Verkhusha Vv mTagBFP2
2011 Journal of Biological Chemistry Structure-guided Engineering Enhances a Phytochrome-based Infrared Fluorescent Protein Auldridge Me, Satyshur Ka, Anstrom Dm, Forest Kt Wi-Phy
2012 Traffic Assessing the Tendency of Fluorescent Proteins to Oligomerize Under Physiologic Conditions Costantini Lm, Fossati M, Francolini M, Snapp El
2012 Proceedings of the National Academy of Sciences A unique series of reversibly switchable fluorescent proteins with beneficial properties for various applications Chang H, Zhang M, Ji W, Chen J, Zhang Y, Liu B, Lu J, Zhang J, Xu P, Xu T mGeos-C, mGeos-E, mGeos-F, mGeos-L, mGeos-M, mGeos-S PDM1-4
2012 Journal of Molecular Biology A Structural Basis for Reversible Photoswitching of Absorbance Spectra in Red Fluorescent Protein rsTagRFP Pletnev S, Subach Fv, Dauter Z, Wlodawer A, Verkhusha Vv rsTagRFP
2012 Nature Communications Structure-guided evolution of cyan fluorescent proteins towards a quantum yield of 93% Goedhart J, Von Stetten D, Noirclerc-Savoye M, Lelimousin M, Joosen L, Hink Ma, Van Weeren L, Gadella Twj, Royant A mTurquoise-146G, mTurquoise-146S, mTurquoise2
2012 Nature Methods Segregation of molecules at cell division reveals native protein localization Landgraf D, Okumus B, Chien P, Baker Ta, Paulsson J mCherry, mCherry2
2012 Journal of the American Chemical Society An Orange Fluorescent Protein with a Large Stokes Shift for Single-Excitation Multicolor FCCS and FRET Imaging Shcherbakova Dm, Hink Ma, Joosen L, Gadella Twj, Verkhusha Vv LSSmOrange
2012 Nature Methods Rational design of true monomeric and bright photoactivatable fluorescent proteins Zhang M, Chang H, Zhang Y, Yu J, Wu L, Ji W, Chen J, Liu B, Lu J, Liu Y, Zhang J, Xu P, Xu T mEos2-NA, mEos3.1, mEos3.2 mEos2,
2012 PLoS ONE Development of Cysteine-Free Fluorescent Proteins for the Oxidative Environment Suzuki T, Arai S, Takeuchi M, Sakurai C, Ebana H, Higashi T, Hashimoto H, Hatsuzawa K, Wada I cfSGFP2, cgfmKate2, cgfTagRFP
2012 Journal of Biological Chemistry Structural Tuning of the Fluorescent Protein iLOV for Improved Photostability Christie Jm, Hitomi K, Arvai As, Hartfield Ka, Mettlen M, Pratt Aj, Tainer Ja, Getzoff Ed phiLOV2.1
2012 PLoS ONE Ultramarine, a Chromoprotein Acceptor for Förster Resonance Energy Transfer Pettikiriarachchi A, Gong L, Perugini Ma, Devenish Rj, Prescott M mRtms5, Ultramarine
2012 Structure Structure of a Bacteriophytochrome and Light-Stimulated Protomer Swapping with a Gene Repressor Bellini D, Papiz Mz RpBphP1
2012 Nucleic Acids Research Simplification of the genetic code: restricted diversity of genetically encoded amino acids Kawahara-Kobayashi A, Masuda A, Araiso Y, Sakai Y, Kohda A, Uchiyama M, Asami S, Matsuda T, Ishitani R, Dohmae N, Yokoyama S, Kigawa T, Nureki O, Kiga D Trp-less GFP
2012 Journal of the American Chemical Society A FRET-Facilitated Photoswitching Using an Orange Fluorescent Protein with the Fast Photoconversion Kinetics Subach Om, Entenberg D, Condeelis Js, Verkhusha Vv PSmOrange2
2012 Scientific Reports Tryptophan-based chromophore in fluorescent proteins can be anionic Sarkisyan Ks, Yampolsky Iv, Solntsev Km, Lukyanov Sa, Lukyanov Ka, Mishin As WasCFP
2012 Angewandte Chemie International Edition Genetic Incorporation of a Metal-Chelating Amino Acid as a Probe for Protein Electron Transfer Liu X, Li J, Dong J, Hu C, Gong W, Wang J GFP-151pyTyrCu, GFP-Tyr151pyz
2012 Nature Methods Improving FRET dynamic range with bright green and red fluorescent proteins Lam Aj, St-Pierre F, Gong Y, Marshall Jd, Cranfill Pj, Baird Ma, Mckeown Mr, Wiedenmann J, Davidson Mw, Schnitzer Mj, Tsien Ry, Lin Mz Clover, mRuby2 eqFP611,
2012 PLoS ONE A Green Fluorescent Protein Containing a QFG Tri-Peptide Chromophore: Optical Properties and X-Ray Crystal Structure Battad Jm, Traore Dak, Byres E, Rossjohn J, Devenish Rj, Olsen S, Wilce Mcj, Prescott M Rtms5
2012 PLoS ONE Crystal Structure of Enhanced Green Fluorescent Protein to 1.35 Å Resolution Reveals Alternative Conformations for Glu222 Arpino Jaj, Rizkallah Pj, Jones Dd EGFP
2012 Journal of the American Chemical Society GFP-Like Phototransformation Mechanisms in the Cytotoxic Fluorescent Protein KillerRed Unraveled by Structural and Spectroscopic Investigations De Rosny E, Carpentier P A44-KR KillerRed
2012 Acta Crystallographica Section D Biological Crystallography Structural basis for the influence of a single mutation K145N on the oligomerization and photoswitching rate of Dronpa Nguyen Bich N, Moeyaert B, Van Hecke K, Dedecker P, Mizuno H, Hofkens J, Van Meervelt L PDM1-4
2012 Nature Communications A monomeric red fluorescent protein with low cytotoxicity Shemiakina Ii, Ermakova Gv, Cranfill Pj, Baird Ma, Evans Ra, Souslova Ea, Staroverov Db, Gorokhovatsky Ay, Putintseva Ev, Gorodnicheva Tv, Chepurnykh Tv, Strukova L, Lukyanov S, Zaraisky Ag, Davidson Mw, Chudakov Dm, Shcherbo D FusionRed, mKate2.5
2012 PLoS ONE mMaple: A Photoconvertible Fluorescent Protein for Use in Multiple Imaging Modalities Mcevoy Al, Hoi H, Bates M, Platonova E, Cranfill Pj, Baird Ma, Davidson Mw, Ewers H, Liphardt J, Campbell Re mMaple
2012 PLoS ONE Recovery of Red Fluorescent Protein Chromophore Maturation Deficiency through Rational Design Moore Mm, Oteng-Pabi Sk, Pandelieva At, Mayo Sl, Chica Ra mPlum-E16P
2012 eLife rsEGFP2 enables fast RESOLFT nanoscopy of living cells Grotjohann T, Testa I, Reuss M, Brakemann T, Eggeling C, Hell Sw, Jakobs S rsEGFP2
2013 Frontiers in Microbiology The genome of the endophytic bacterium H. frisingense GSF30T identifies diverse strategies in the Herbaspirillum genus to interact with plants Straub D, Rothballer M, Hartmann A, Ludewig U hfriFP
2013 Biochemical and Biophysical Research Communications Cysteineless non-glycosylated monomeric blue fluorescent protein, secBFP2, for studies in the eukaryotic secretory pathway Costantini Lm, Subach Om, Jaureguiberry-Bravo M, Verkhusha Vv, Snapp El secBFP2
2013 Mol. BioSyst. Minimum set of mutations needed to optimize cyan fluorescent proteins for live cell imaging Erard M, Fredj A, Pasquier H, Beltolngar D-B, Bousmah Y, Derrien V, Vincent P, Merola F Aquamarine
2013 Frontiers in Molecular Neuroscience Genetically encoded calcium indicators for multi-color neural activity imaging and combination with optogenetics Akerboom J, Carreras Calderón N, Tian L, Wabnig S, Prigge M, Tolö J, Gordus A, Orger Mb, Severi Ke, Macklin Jj, Patel R, Pulver Sr, Wardill Tj, Fischer E, Schüler C, Chen T-W, Sarkisyan Ks, Marvin Js, Bargmann Ci, Kim Ds, Kügler S, Lagnado L, Hegemann P, Gottschalk A, Schreiter Er, Looger Ll RCaMP
2013 Chem. Commun. Painting proteins blue: β-(1-azulenyl)-l-alanine as a probe for studying protein–protein interactions Moroz Ys, Binder W, Nygren P, Caputo Ga, Korendovych Iv BP02
2013 Coral Reefs Screening by coral green fluorescent protein (GFP)-like chromoproteins supports a role in photoprotection of zooxanthellae Smith Eg, D’Angelo C, Salih A, Wiedenmann J amilCP580, amilCP586, amilCP604, apolCP584, avalCP580, mfolCP577 asCP562, shysCP562
2013 The Journal of Physical Chemistry B Revealing the Excited-State Dynamics of the Fluorescent Protein Dendra2 Fron E, Van Der Auweraer M, Moeyaert B, Michiels J, Mizuno H, Hofkens J, Adam V Dendra2
2013 Journal of the American Chemical Society Improving the Second-Order Nonlinear Optical Response of Fluorescent Proteins: The Symmetry Argument De Meulenaere E, Nguyen Bich N, De Wergifosse M, Van Hecke K, Van Meervelt L, Vanderleyden J, Champagne B, Clays K SHardonnay
2013 Scientific Reports Highlighted Ca2+ imaging with a genetically encoded ‘caged’ indicator Matsuda T, Horikawa K, Saito K, Nagai T DarkVenus, DimVenus
2013 Nature Methods A bright monomeric green fluorescent protein derived from Branchiostoma lanceolatum Shaner Nc, Lambert Gg, Chammas A, Ni Y, Cranfill Pj, Baird Ma, Sell Br, Allen Jr, Day Rn, Israelsson M, Davidson Mw, Wang J dLanYFP, LanYFP, mNeonGreen Clover, mTurquoise2
2013 Molecular Immunology Identification of a MHC I-restricted epitope of DsRed in C57BL/6 mice Davey Gm, Mueller Sn, Van Vliet C, Gigowski M, Zaid A, Davies B, Carbone Fr, Heath Wr FP586
2013 Angewandte Chemie International Edition Different Photochemical Events of a Genetically Encoded Phenyl Azide Define and Modulate GFP Fluorescence Reddington Sc, Rizkallah Pj, Watson Pd, Pearson R, Tippmann Em, Jones Dd Superfolder GFP
2013 Acta Crystallographica Section D Biological Crystallography Yellow fluorescent protein phiYFPv (Phialidium): structure and structure-based mutagenesis Pletneva Nv, Pletnev Vz, Souslova E, Chudakov Dm, Lukyanov S, Martynov Vi, Arhipova S, Artemyev I, Wlodawer A, Dauter Z, Pletnev S phiYFPv
2013 Scientific Reports Extended Stokes Shift in Fluorescent Proteins: Chromophore–Protein Interactions in a Near-Infrared TagRFP675 Variant Piatkevich Kd, Malashkevich Vn, Morozova Ks, Nemkovich Na, Almo Sc, Verkhusha Vv TagRFP675
2013 Cell A Bilirubin-Inducible Fluorescent Protein from Eel Muscle Kumagai A, Ando R, Miyatake H, Greimel P, Kobayashi T, Hirabayashi Y, Shimogori T, Miyawaki A UnaG
2013 Nature Methods Near-infrared fluorescent proteins for multicolor in vivo imaging Shcherbakova Dm, Verkhusha Vv iRFP670, iRFP682, iRFP702, iRFP720 RpBphP6
2013 PLoS ONE mBeRFP, an Improved Large Stokes Shift Red Fluorescent Protein Yang J, Wang L, Yang F, Luo H, Xu L, Lu J, Zeng S, Zhang Z mBeRFP LSS-mKate2, mKeima
2013 Nature Ultrasensitive fluorescent proteins for imaging neuronal activity Chen T-W, Wardill Tj, Sun Y, Pulver Sr, Renninger Sl, Baohan A, Schreiter Er, Kerr Ra, Orger Mb, Jayaraman V, Looger Ll, Svoboda K, Kim Ds GCaMP6f
2013 Acta Crystallographica Section D Biological Crystallography Structure of the red fluorescent protein from a lancelet (Branchiostoma lanceolatum): a novel GYG chromophore covalently bound to a nearby tyrosine Pletnev Vz, Pletneva Nv, Lukyanov Ka, Souslova Ea, Fradkov Af, Chudakov Dm, Chepurnykh T, Yampolsky Iv, Wlodawer A, Dauter Z, Pletnev S laGFP, lanRFP-&Delta;S83l, laRFP
2013 X-ray structure of the cyan fluorescent protein mTurquoise-GL (K206A mutant) in space group C222(1) Von Stetten D, Lelimousin M, Oost K, Noirclerc-Savoye M, Gadella Twj, Goedhart J, Royant A mTurquoise2-G
2013 Scientific Reports SuperNova, a monomeric photosensitizing fluorescent protein for chromophore-assisted light inactivation Takemoto K, Matsuda T, Sakai N, Fu D, Noda M, Uchiyama S, Kotera I, Arai Y, Horiuchi M, Fukui K, Ayabe T, Inagaki F, Suzuki H, Nagai T SuperNova Red
2013 PLoS ONE Phanta: A Non-Fluorescent Photochromic Acceptor for pcFRET Don Paul C, Kiss C, Traore Dak, Gong L, Wilce Mcj, Devenish Rj, Bradbury A, Prescott M Phanta eCGP123
2013 Chemistry & Biology An Engineered Monomeric Zoanthus sp. Yellow Fluorescent Protein Hoi H, Howe Es, Ding Y, Zhang W, Baird Ma, Sell Br, Allen Jr, Davidson Mw, Campbell Re dPapaya0.1, mPapaya, mPapaya0.3, mPapaya0.6, mPapaya0.7, tPapaya0.01
2013 Scientific Reports A New Protein-Protein Interaction Sensor Based on Tripartite Split-GFP Association Cabantous S, Nguyen Hb, Pedelacq J-D, Koraïchi F, Chaudhary A, Ganguly K, Lockard Ma, Favre G, Terwilliger Tc, Waldo Gs TripartiteGFP
2013 Journal of the American Chemical Society Structural Evidence for a Two-Regime Photobleaching Mechanism in a Reversibly Switchable Fluorescent Protein Duan C, Adam V, Byrdin M, Ridard J, Kieffer-Jaquinod S, Morlot C, Arcizet D, Demachy I, Bourgeois D IrisFP
2013 Journal of Neuroscience Visualization of Synaptic Inhibition with an Optogenetic Sensor Developed by Cell-Free Protein Engineering Automation Grimley Js, Li L, Wang W, Wen L, Beese Ls, Hellinga Hw, Augustine Gj Clomeleon
2013 Biomedical Optics Express In vitro characterization of genetically expressed absorbing proteins using photoacoustic spectroscopy Laufer J, Jathoul A, Pule M, Beard P E2-Crimson-NF aeBlue, cjBlue
2013 Biochemistry Acid–Base Catalysis and Crystal Structures of a Least Evolved Ancestral GFP-like Protein Undergoing Green-to-Red Photoconversion Kim H, Grunkemeyer Tj, Modi C, Chen L, Fromme R, Matz Mv, Wachter Rm LEA
2013 Acta Crystallographica Section D Biological Crystallography Split green fluorescent protein as a modular binding partner for protein crystallization Nguyen Hb, Hung L-W, Yeates To, Terwilliger Tc, Waldo Gs sfCherry
2014 RSC Adv. A photochromic and thermochromic fluorescent protein Shen Y, Wiens Md, Campbell Re ShyRFP
2014 Photochem. Photobiol. Sci. Excited state dynamics of the photoconvertible fluorescent protein Kaede revealed by ultrafast spectroscopy Fron E, Sliwa M, Adam V, Michiels J, Rocha S, Dedecker P, Hofkens J, Mizuno H Kaede
2014 Photochem. Photobiol. Sci. The photophysics of LOV-based fluorescent proteins – new tools for cell biology Wingen M, Potzkei J, Endres S, Casini G, Rupprecht C, Fahlke C, Krauss U, Jaeger K-E, Drepper T, Gensch T Pp2 FbFP
2014 Nature Methods Single-molecule evaluation of fluorescent protein photoactivation efficiency using an in vivo nanotemplate Durisic N, Laparra-Cuervo L, Sandoval-Álvarez , Borbely Js, Lakadamyali M Dendra2, mClavGR2, mEos2, mEos3.2, mMaple, PA-GFP, PAmCherry1
2014 ACS Nano Green-to-Red Photoconvertible Dronpa Mutant for Multimodal Super-resolution Fluorescence Microscopy Moeyaert B, Nguyen Bich N, De Zitter E, Rocha S, Clays K, Mizuno H, Van Meervelt L, Hofkens J, Dedecker P ffDronpa, pcDronpa, pcDronpa2
2014 ChemPhysChem Two-Color RESOLFT Nanoscopy with Green and Red Fluorescent Photochromic Proteins Lavoie-Cardinal F, Jensen Na, Westphal V, Stiel Ac, Chmyrov A, Bierwagen J, Testa I, Jakobs S, Hell Sw rsCherryRev1.4
2014 Marine Biotechnology Different Visible Colors and Green Fluorescence Were Obtained from the Mutated Purple Chromoprotein Isolated from Sea Anemone Chiang C-Y, Chen Y-L, Tsai H-J shCP, shCP-E63S, shCP-Q39S, shCP-T194I
2014 Nature Methods Independent optical excitation of distinct neural populations Klapoetke Nc, Murata Y, Kim Ss, Pulver Sr, Birdsey-Benson A, Cho Yk, Morimoto Tk, Chuong As, Carpenter Ej, Tian Z, Wang J, Xie Y, Yan Z, Zhang Y, Chow By, Surek B, Melkonian M, Jayaraman V, Constantine-Paton M, Wong Gk-S, Boyden Es ChrimsonR, Chronos
2014 Nature Methods Non-invasive intravital imaging of cellular differentiation with a bright red-excitable fluorescent protein Chu J, Haynes Rd, Corbel Sy, Li P, González-González E, Burg Js, Ataie Nj, Lam Aj, Cranfill Pj, Baird Ma, Davidson Mw, Ng H-L, Garcia Kc, Contag Ch, Shen K, Blau Hm, Lin Mz mCardinal, mNeptune2, mNeptune2.5
2014 Open Biology An endogenous green fluorescent protein-photoprotein pair in Clytia hemisphaerica eggs shows co-targeting to mitochondria and efficient bioluminescence energy transfer Fourrage C, Swann K, Gonzalez Garcia Jr, Campbell Ak, Houliston E CheGFP1, CheGFP2, CheGFP3, CheGFP4
2014 PLoS ONE An Engineered Palette of Metal Ion Quenchable Fluorescent Proteins Yu X, Strub M-P, Barnard Tj, Noinaj N, Piszczek G, Buchanan Sk, Taraska Jw iq-EBFP2, iq-mApple, iq-mCerulean3, iq-mEmerald, iq-mKate2, iq-mVenus
2014 Biochemical and Biophysical Research Communications Novel fluorescent protein from Hydnophora rigida possesses green emission Idrees M, Thangavelu K, Sikaroodi M, Smith C, Sivaraman J, Gillevet Pm, Bokhari H HriGFP
2014 Nature Communications An improved monomeric infrared fluorescent protein for neuronal and tumour brain imaging Yu D, Gustafson Wc, Han C, Lafaye C, Noirclerc-Savoye M, Ge W-P, Thayer Da, Huang H, Kornberg Tb, Royant A, Jan Ly, Jan Yn, Weiss Wa, Shu X iFP2.0
2014 Bioscience, Biotechnology, and Biochemistry Improved Gateway Binary Vectors: High-Performance Vectors for Creation of Fusion Constructs in Transgenic Analysis of Plants Nakagawa T, Suzuki T, Murata S, Nakamura S, Hino T, Maeo K, Tabata R, Kawai T, Tanaka K, Niwa Y, Watanabe Y, Nakamura K, Kimura T, Ishiguro S G3GFP
2014 Proceedings of the National Academy of Sciences Characterization and development of photoactivatable fluorescent proteins for single-molecule-based superresolution imaging Wang S, Moffitt Jr, Dempsey Gt, Xie Xs, Zhuang X mMaple2, mMaple3 mMaple,
2014 PLoS ONE Genetically-Encoded Yellow Fluorescent cAMP Indicator with an Expanded Dynamic Range for Dual-Color Imaging Odaka H, Arai S, Inoue T, Kitaguchi T Flamindo2
2014 Scientific Reports Spectral and structural comparison between bright and dim green fluorescent proteins in Amphioxus Bomati Ek, Haley Je, Noel Jp, Deheyn Dd bfloGFPa1, bfloGFPc1
2014 ACS Synthetic Biology Engineering and Characterization of New LOV-Based Fluorescent Proteins from <i>Chlamydomonas reinhardtii</i> and <i>Vaucheria frigida</i> Mukherjee A, Weyant Kb, Agrawal U, Walker J, Cann Iko, Schroeder Cm CreiLOV
2014 Biophysical Journal Evaluation of Fluorophores to Label SNAP-Tag Fused Proteins for Multicolor Single-Molecule Tracking Microscopy in Live Cells Bosch Pj, Corrêa Ir, Sonntag Mh, Ibach J, Brunsveld L, Kanger Js, Subramaniam V DyLight549P1
2014 Proceedings of the National Academy of Sciences Optimized two-color super resolution imaging of Drp1 during mitochondrial fission with a slow-switching Dronpa variant Rosenbloom Ab, Lee S-H, To M, Lee A, Shin Jy, Bustamante C rsKame
2014 Chemistry &amp; Biology Photoswitchable Red Fluorescent Protein with a Large Stokes Shift Piatkevich Kd, English Bp, Malashkevich Vn, Xiao H, Almo Sc, Singer Rh, Verkhusha Vv PSLSSmKate
2014 Biotechnology and Bioengineering Rapid directed evolution of stabilized proteins with cellular high-throughput encapsulation solubilization and screening (CHESS) Yong Kj, Scott Dj usGFP, vsGFP
2014 The Journal of Cell Biology pHuji, a pH-sensitive red fluorescent protein for imaging of exo- and endocytosis Shen Y, Rosendale M, Campbell Re, Perrais D pHuji
2014 BMC Cell Biology In vivo imaging of Nematostella vectensis embryogenesis and late development using fluorescent probes Dubuc Tq, Dattoli Aa, Babonis Ls, Salinas-Saavedra M, Röttinger E, Martindale Mq, Postma M mTurquoise2
2015 Photochemical & Photobiological Sciences Singlet oxygen photosensitisation by the fluorescent protein Pp2FbFP L30M, a novel derivative of Pseudomonas putida flavin-binding Pp2FbFP Torra J, Burgos-Caminal A, Endres S, Wingen M, Drepper T, Gensch T, Ruiz-González R, Nonell S Pp2FbFP L30M
2015 Photochemical & Photobiological Sciences NpR3784 is the prototype for a distinctive group of red/green cyanobacteriochromes using alternative Phe residues for photoproduct tuning Rockwell Nc, Martin Ss, Gan F, Bryant Da, Lagarias Jc NpR3784g
2015 Nature Methods Fixation-resistant photoactivatable fluorescent proteins for CLEM Paez-Segala Mg, Sun Mg, Shtengel G, Viswanathan S, Baird Ma, Macklin Jj, Patel R, Allen Jr, Howe Es, Piszczek G, Hess Hf, Davidson Mw, Wang Y, Looger Ll mEos4a, mEos4b
2015 Methods and Applications in Fluorescence Rational design of enhanced photoresistance in a photoswitchable fluorescent protein Duan C, Byrdin M, El Khatib M, Henry X, Adam V, Bourgeois D IrisFP-M159A IrisFP
2015 Journal of the American Chemical Society Rational Design of an Efficient, Genetically Encodable, Protein-Encased Singlet Oxygen Photosensitizer Westberg M, Holmegaard L, Pimenta Fm, Etzerodt M, Ogilby Pr SOPP
2015 ACS Nano Development of a Reversibly Switchable Fluorescent Protein for Super-Resolution Optical Fluctuation Imaging (SOFI) Zhang X, Chen X, Zeng Z, Zhang M, Sun Y, Xi P, Peng J, Xu P Skylan-S
2015 Molecular Cell A Diffraction-Quality Protein Crystal Processed as an Autophagic Cargo Tsutsui H, Jinno Y, Shoda K, Tomita A, Matsuda M, Yamashita E, Katayama H, Nakagawa A, Miyawaki A Xpa
2015 Nature Methods A fast- and positively photoswitchable fluorescent protein for ultralow-laser-power RESOLFT nanoscopy Tiwari Dk, Arai Y, Yamanaka M, Matsuda T, Agetsuma M, Nakano M, Fujita K, Nagai T Kohinoor
2015 PLOS ONE LucY: A Versatile New Fluorescent Reporter Protein Auldridge Me, Cao H, Sen S, Franz Lp, Bingman Ca, Yennamalli Rm, Phillips Gn, Mead D, Steinmetz Ej LucY
2015 Analytical Chemistry High-Speed Multiparameter Photophysical Analyses of Fluorophore Libraries Dean Km, Davis Lm, Lubbeck Jl, Manna P, Friis P, Palmer Ae, Jimenez R mOrange2
2015 Proceedings of the National Academy of Sciences Genetically encoded sensors of protein hydrodynamics and molecular proximity Hoepker Ac, Wang A, Le Marois A, Suhling K, Yan Y, Marriott G Lumazine binding protein
2015 Proteins: Structure, Function, and Bioinformatics Thermal green protein, an extremely stable, nonaggregating fluorescent protein created by structure-guided surface engineering Close Dw, Paul Cd, Langan Ps, Wilce Mcj, Traore Dak, Halfmann R, Rocha Rc, Waldo Gs, Payne Rj, Rucker Jb, Prescott M, Bradbury Arm Thermostable Green Protein
2015 Molecular Biology of the Cell Live-cell multiphoton fluorescence correlation spectroscopy with an improved large Stokes shift fluorescent protein Guan Y, Meurer M, Raghavan S, Rebane A, Lindquist Jr, Santos S, Kats I, Davidson Mw, Mazitschek R, Hughes Te, Drobizhev M, Knop M, Shah Jv hmKeima8.5
2015 Scientific Reports Comparative study reveals better far-red fluorescent protein for whole body imaging Luker Ke, Pata P, Shemiakina Ii, Pereverzeva A, Stacer Ac, Shcherbo Ds, Pletnev Vz, Skolnaja M, Lukyanov Ka, Luker Gd, Pata I, Chudakov Dm Katushka2S
2015 PLOS ONE Survey of Red Fluorescence Proteins as Markers for Secretory Granule Exocytosis Gandasi Nr, Vestö K, Helou M, Yin P, Saras J, Barg S pHuji
2015 Nature Methods A naturally monomeric infrared fluorescent protein for protein labeling in vivo Yu D, Baird Ma, Allen Jr, Howe Es, Klassen Mp, Reade A, Makhijani K, Song Y, Liu S, Murthy Z, Zhang S-Q, Weiner Od, Kornberg Tb, Jan Y-N, Davidson Mw, Shu X mIFP
2015 Biophysical Journal Green Fluorescent Protein with Anionic Tryptophan-Based Chromophore and Long Fluorescence Lifetime Sarkisyan Ks, Goryashchenko As, Lidsky Pv, Gorbachev Da, Bozhanova Ng, Gorokhovatsky Ay, Pereverzeva Ar, Ryumina Ap, Zherdeva Vv, Savitsky Ap, Solntsev Km, Bommarius As, Sharonov Gv, Lindquist Jr, Drobizhev M, Hughes Te, Rebane A, Lukyanov Ka, Mishin As NowGFP EGFP,
2015 Nature Communications A palette of fluorescent proteins optimized for diverse cellular environments Costantini Lm, Baloban M, Markwardt Ml, Rizzo M, Guo F, Verkhusha Vv, Snapp El moxBFP, moxCerulean3, moxGFP, moxNeonGreen, moxVenus, oxBFP, oxCerulean, oxGFP, oxVenus
2015 Journal of Innovative Optical Health Sciences Fluorescence color diversity of great barrier reef corals Lapshin G, Salih A, Kolosov P, Golovkina M, Zavorotnyi Y, Ivashina T, Vinokurov L, Bagratashvili V, Savitsky A SAASoti
2015 PLOS ONE Chromophore Deprotonation State Alters the Optical Properties of Blue Chromoprotein Chiang C-Y, Lee C-C, Lo S-Y, Wang Ah-J, Tsai H-J sgBP, sgBP-Q62M, sgBP-S157C, sgBP-S157T
2015 Acta Crystallographica Section D Biological Crystallography Structure of the green fluorescent protein NowGFP with an anionic tryptophan-based chromophore Pletnev Vz, Pletneva Nv, Sarkisyan Ks, Mishin As, Lukyanov Ka, Goryacheva Ea, Ziganshin Rh, Dauter Z, Pletnev S NowGFP
2015 PLOS ONE Fluorescent Protein Based FRET Pairs with Improved Dynamic Range for Fluorescence Lifetime Measurements George Abraham B, Sarkisyan Ks, Mishin As, Santala V, Tkachenko Nv, Karp M NowGFP
2015 ACS Nano Expression-Enhanced Fluorescent Proteins Based on Enhanced Green Fluorescent Protein for Super-resolution Microscopy Duwé S, De Zitter E, Gielen V, Moeyaert B, Vandenberg W, Grotjohann T, Clays K, Jakobs S, Van Meervelt L, Dedecker P rsGreen1
2015 Angewandte Chemie International Edition Rational Structure-Based Design of Bright GFP-Based Complexes with Tunable Dimerization Eshaghi M, Sun G, Grüter A, Lim Cl, Chee Yc, Jung G, Jauch R, Wohland T, Chen Sl vsfGFP-0, vsfGFP-9
2015 Scientific Reports A dark green fluorescent protein as an acceptor for measurement of Förster resonance energy transfer Murakoshi H, Shibata Ace, Nakahata Y, Nabekura J ShadowG sREACh
2015 The Journal of Physical Chemistry B Mechanism Behind the Apparent Large Stokes Shift in LSSmOrange Investigated by Time-Resolved Spectroscopy Fron E, De Keersmaecker H, Rocha S, Baeten Y, Lu G, Uji-I H, Van Der Auweraer M, Hofkens J, Mizuno H LSSmOrange
2015 Scientific Reports Monomeric Garnet, a far-red fluorescent protein for live-cell STED imaging Hense A, Prunsche B, Gao P, Ishitsuka Y, Nienhaus K, Ulrich Nienhaus G mGarnet
2015 PLOS ONE KillerOrange, a Genetically Encoded Photosensitizer Activated by Blue and Green Light Sarkisyan Ks, Zlobovskaya Oa, Gorbachev Da, Bozhanova Ng, Sharonov Gv, Staroverov Db, Egorov Es, Ryabova Av, Solntsev Km, Mishin As, Lukyanov Ka KillerOrange
2015 PLOS ONE Crystal Structure of Phototoxic Orange Fluorescent Proteins with a Tryptophan-Based Chromophore Pletneva Nv, Pletnev Vz, Sarkisyan Ks, Gorbachev Da, Egorov Es, Mishin As, Lukyanov Ka, Dauter Z, Pletnev S mKillerOrange KillerOrange
2016 Conference on Lasers and Electro-Optics Time-resolved flow cytometry for lifetime measurements of near-infrared fluorescent proteins Yang Z, Shcherbakova Dm, Verkhusha V, Houston Jp iRFP682
2016 Chemical Communications Assessing the potential of photosensitizing flavoproteins as tags for correlative microscopy Rodríguez-Pulido A, Cortajarena Al, Torra J, Ruiz-González R, Nonell S, Flors C miniSOG Q103V
2016 Scientific Reports Allosteric effects of chromophore interaction with dimeric near-infrared fluorescent proteins engineered from bacterial phytochromes Stepanenko Ov, Baloban M, Bublikov Gs, Shcherbakova Dm, Stepanenko Ov, Turoverov Kk, Kuznetsova Im, Verkhusha Vv iRFP713/V256C
2016 Pathogens Brighter Fluorescent Derivatives of UTI89 Utilizing a Monomeric vGFP Eshaghi M, Mehershahi K, Chen S vsfGFP-9
2016 Scientific Reports Rational design of ultrastable and reversibly photoswitchable fluorescent proteins for super-resolution imaging of the bacterial periplasm El Khatib M, Martins A, Bourgeois D, Colletier J-P, Adam V rsFolder, rsFolder2
2016 Journal of the American Chemical Society Arginine 66 Controls Dark-State Formation in Green-to-Red Photoconvertible Fluorescent Proteins Berardozzi R, Adam V, Martins A, Bourgeois D Dendra2-T69A, mEos2-A69T mEos2
2016 Scientific Reports Improving brightness and photostability of green and red fluorescent proteins for live cell imaging and FRET reporting Bajar Bt, Wang Es, Lam Aj, Kim Bb, Jacobs Cl, Howe Es, Davidson Mw, Lin Mz, Chu J Clover1.5, dClover2, dClover2 A206K, mClover1.5, mClover3, mRuby3
2016 The Journal of Physical Chemistry Letters Serial Femtosecond Crystallography and Ultrafast Absorption Spectroscopy of the Photoswitchable Fluorescent Protein IrisFP Colletier J-P, Sliwa M, Gallat F-X, Sugahara M, Guillon V, Schirò G, Coquelle N, Woodhouse J, Roux L, Gotthard G, Royant A, Uriarte Lm, Ruckebusch C, Joti Y, Byrdin M, Mizohata E, Nango E, Tanaka T, Tono K, Yabashi M, Adam V, Cammarata M, Schlichting I, Bourgeois D, Weik M IrisFP
2016 Molecular Microbiology A streptococcal NRAMP homologue is crucial for the survival of<i>S</i><i>treptococcus agalactiae</i>under low pH conditions Shabayek S, Bauer R, Mauerer S, Mizaikoff B, Spellerberg B Sirius
2016 Scientific Reports Engineering Dark Chromoprotein Reporters for Photoacoustic Microscopy and FRET Imaging Li Y, Forbrich A, Wu J, Shao P, Campbell Re, Zemp R cjBlue2, dUltramarine2, tdUltramarine2 cjBlue, Ultramarine
2016 Scientific Reports A novel fluorescent protein from the deep-sea anemone Cribrinopsis japonica (Anthozoa: Actiniaria) Tsutsui K, Shimada E, Ogawa T, Tsuruwaka Y cjFP510
2016 eLife Sensitive red protein calcium indicators for imaging neural activity Dana H, Mohar B, Sun Y, Narayan S, Gordus A, Hasseman Jp, Tsegaye G, Holt Gt, Hu A, Walpita D, Patel R, Macklin Jj, Bargmann Ci, Ahrens Mb, Schreiter Er, Jayaraman V, Looger Ll, Svoboda K, Kim Ds jRGECO1a
2016 PLOS ONE Mutagenesis of mNeptune Red-Shifts Emission Spectrum to 681-685 nm Li Zy, Zhang Zp, Bi Lj, Cui Zq, Deng Jy, Wang Db, Zhang X-E mNeptune681, mNeptune684
2016 The Journal of Physical Chemistry Letters Far-Red Emission of mPlum Fluorescent Protein Results from Excited-State Interconversion between Chromophore Hydrogen-Bonding States Yoon E, Konold Pe, Lee J, Joo T, Jimenez R mPlum
2016 Nature Biotechnology A bright cyan-excitable orange fluorescent protein facilitates dual-emission microscopy and enhances bioluminescence imaging in vivo Chu J, Oh Y, Sens A, Ataie N, Dana H, Macklin Jj, Laviv T, Welf Es, Dean Km, Zhang F, Kim Bb, Tang Ct, Hu M, Baird Ma, Davidson Mw, Kay Ma, Fiolka R, Yasuda R, Kim Ds, Ng H-L, Lin Mz CyOFP1
2016 Nature Methods Quantitative assessment of fluorescent proteins Cranfill Pj, Sell Br, Baird Ma, Allen Jr, Lavagnino Z, De Gruiter Hm, Kremers G-J, Davidson Mw, Ustione A, Piston Dw mEGFP, mEos4a, mEos4b, mTagBFP2
2016 Scientific Reports Identification and Characterisation of a pH-stable GFP Roberts Tm, Rudolf F, Meyer A, Pellaux R, Whitehead E, Panke S, Held M pH-tdGFP
2016 Acta Crystallographica Section D Structural Biology Crystal structure of the fluorescent protein fromDendronephthyasp. in both green and photoconverted red forms Pletneva Nv, Pletnev S, Pakhomov Aa, Chertkova Rv, Martynov Vi, Muslinkina L, Dauter Z, Pletnev Vz dendFP
2016 The Journal of Physical Chemistry Letters Fluorescence from Multiple Chromophore Hydrogen-Bonding States in the Far-Red Protein TagRFP675 Konold Pe, Yoon E, Lee J, Allen Sl, Chapagain Pp, Gerstman Bs, Regmi Ck, Piatkevich Kd, Verkhusha Vv, Joo T, Jimenez R TagRFP675
2016 Nature Methods A far-red fluorescent protein evolved from a cyanobacterial phycobiliprotein Rodriguez Ea, Tran Gn, Gross La, Crisp Jl, Shu X, Lin Jy, Tsien Ry R3-2+PCB, smURFP, TDsmURFP, TeAPCα
2016 Nature Communications Bright monomeric near-infrared fluorescent proteins as tags and biosensors for multiscale imaging Shcherbakova Dm, Baloban M, Emelyanov Av, Brenowitz M, Guo P, Verkhusha Vv miRFP670, miRFP670v1, miRFP703, miRFP709 iFP2.0, RpBphP1
2016 Proceedings of the National Academy of Sciences Highly photostable, reversibly photoswitchable fluorescent protein with high contrast ratio for live-cell superresolution microscopy Zhang X, Zhang M, Li D, He W, Peng J, Betzig E, Xu P Skylan-NS
2016 Protein Engineering Design and Selection Blue fluorescent protein derived from the mutated purple chromoprotein isolated from the sea anemone Stichodactyla haddoni Chiang C-Y, Lin C-Y, Chen Y-T, Tsai H-J shBFP, shBFP-N158K/L173I, shBFP-N158S/L173I, shCP-E63L/Y64H
2016 Biophysical Journal Photoconvertible Behavior of LSSmOrange Applicable for Single Emission Band Optical Highlighting De Keersmaecker H, Fron E, Rocha S, Kogure T, Miyawaki A, Hofkens J, Mizuno H LSSmOrange
2016 ACS Chemical Biology Cysteine Sulfoxidation Increases the Photostability of Red Fluorescent Proteins Ren H, Yang B, Ma C, Hu Ys, Wang Pg, Wang L mStable
2016 Proceedings of the National Academy of Sciences Blue protein with red fluorescence Ghosh S, Yu C-L, Ferraro Dj, Sudha S, Pal Sk, Schaefer Wf, Gibson Dt, Ramaswamy S Sandercyanin
2016 Scientific Reports Expression of varied GFPs in Saccharomyces cerevisiae: codon optimization yields stronger than expected expression and fluorescence intensity Kaishima M, Ishii J, Matsuno T, Fukuda N, Kondo A yEGFP
2016 Nature Methods Simultaneous dual-color fluorescence lifetime imaging with novel red-shifted fluorescent proteins Laviv T, Kim Bb, Chu J, Lam Aj, Lin Mz, Yasuda R CyRFP1, mCyRFP1
2016 Nature Methods Fluorescent indicators for simultaneous reporting of all four cell cycle phases Bajar Bt, Lam Aj, Badiee Rk, Oh Y-H, Chu J, Zhou Xx, Kim N, Kim Bb, Chung M, Yablonovitch Al, Cruz Bf, Kulalert K, Tao Jj, Meyer T, Su X-D, Lin Mz Maroon0.1, mMaroon1
2016 Molecular Biology of the Cell Comparative assessment of fluorescent proteins for in vivo imaging in an animal model system Heppert Jk, Dickinson Dj, Pani Am, Higgins Cd, Steward A, Ahringer J, Kuhn Jr, Goldstein B GFP (S65T), mCherry, mKate2, mNeonGreen, mRuby2, TagRFP-T, YPet
2016 ChemBioChem A Tandem Green-Red Heterodimeric Fluorescent Protein with High FRET Efficiency Wiens Md, Shen Y, Li X, Salem Ma, Smisdom N, Zhang W, Brown A, Campbell Re GdT, GGvT, GRvT, RRvT
2016 Nature Methods mScarlet: a bright monomeric red fluorescent protein for cellular imaging Bindels Ds, Haarbosch L, Van Weeren L, Postma M, Wiese Ke, Mastop M, Aumonier S, Gotthard G, Royant A, Hink Ma, Gadella Twj mRed7, mRed7Q1, mRed7Q1S1, mRed7Q1S1BM, mScarlet, mScarlet-H, mScarlet-I mApple, mKate2, mRuby2, mRuby3, TagRFP-T
2016 Acta Crystallographica Section D Structural Biology Structural analysis of the bright monomeric yellow-green fluorescent protein mNeonGreen obtained by directed evolution Clavel D, Gotthard G, Von Stetten D, De Sanctis D, Pasquier H, Lambert Gg, Shaner Nc, Royant A mNeonGreen
2016 Scientific Reports Dual observation of the ATP-evoked small GTPase activation and Ca2+ transient in astrocytes using a dark red fluorescent protein Nakahata Y, Nabekura J, Murakoshi H mCherry_I202T, mCherry_I202Y
2016 FEBS Letters The mechanism of folding robustness revealed by the crystal structure of extra-superfolder GFP Choi Jy, Jang T-H, Park Hh esGFP
2017 Chemical Communications A far-red emitting fluorescent marker protein, mGarnet2, for microscopy and STED nanoscopy Matela G, Gao P, Guigas G, Eckert Af, Nienhaus K, Ulrich Nienhaus G mGarnet2
2017 Chemical Communications moxDendra2: an inert photoswitchable protein for oxidizing environments Kaberniuk Aa, Morano Nc, Verkhusha Vv, Snapp El moxDendra2, moxEos3.2 Dendra2,
2017 Methods in Enzymology Using Photoconvertible and Extractable Fluorescent Proteins to Study Autophagy in Plants Abiodun Mo, Matsuoka K mKikGR
2017 Cell Chemical Biology Precision Optogenetic Tool for Selective Single- and Multiple-Cell Ablation in a Live Animal Model System Makhijani K, To T-L, Ruiz-González R, Lafaye C, Royant A, Shu X miniSOG2
2017 Russian Journal of Bioorganic Chemistry Three-dimensional structure of a pH-dependent fluorescent protein WasCFP with a tryptophan based deprotonated chromophore Pletnev Vz, Pletneva Nv, Efremov Rg, Goryacheva Ea, Artemyev Iv, Arkhipova Sf, Sarkisyan Ks, Mishin As, Lukyanov Ka, Pletnev Sv WasCFP
2017 PLOS ONE Engineering of mCherry variants with long Stokes shift, red-shifted fluorescence, and low cytotoxicity Shen Y, Chen Y, Wu J, Shaner Nc, Campbell Re LSSmCherry1, mCherry1.5, mCherry2, RDSmCherry0.1, RDSmCherry0.2, RDSmCherry0.5, RDSmCherry1
2017 Nature Protocols Diverse protocols for correlative super-resolution fluorescence imaging and electron microscopy of chemically fixed samples Kopek Bg, Paez-Segala Mg, Shtengel G, Sochacki Ka, Sun Mg, Wang Y, Xu Cs, Van Engelenburg Sb, Taraska Jw, Looger Ll, Hess Hf mEos4a, mEos4b
2017 Russian Journal of Bioorganic Chemistry Green fluorescent protein with tryptophan-based chromophore stable at low pH Gorbachev Da, Sarkisyan Ks, Mishin As, Lukyanov Ka mTurquoise2-1710
2017 The Journal of Physical Chemistry Letters Blue-Shifted Green Fluorescent Protein Homologues Are Brighter than Enhanced Green Fluorescent Protein under Two-Photon Excitation Molina Rs, Tran Tm, Campbell Re, Lambert Gg, Salih A, Shaner Nc, Hughes Te, Drobizhev M Rosmarinus amFP486, dsFP483, dTFP0.2, EGFP, KCY-G4219, meffCFP, meleCFP, mNeonGreen,
2017 Cell Chemical Biology How to Increase Brightness of Near-Infrared Fluorescent Proteins in Mammalian Cells Shemetov Aa, Oliinyk Os, Verkhusha Vv miRFP670
2017 Robust and Bright Genetically Encoded Fluorescent Markers for Highlighting Structures and Compartments in Mammalian Cells Chertkova Ao, Mastop M, Postma M, Van Bommel N, Van Der Niet S, Batenburg Kl, Joosen L, Gadella Twj, Okada Y, Goedhart J mNeonGreen, mScarlet-I, mTurquoise2
2017 Angewandte Chemie International Edition Rational Engineering of Photoconvertible Fluorescent Proteins for Dual-Color Fluorescence Nanoscopy Enabled by a Triplet-State Mechanism of Primed Conversion Mohr Ma, Kobitski Ay, Sabater Lr, Nienhaus K, Obara Cj, Lippincott-Schwartz J, Nienhaus Gu, Pantazis P mEos2-A69T
2017 PLOS ONE Molecular evolution of versatile derivatives from a GFP-like protein in the marine copepod Chiridius poppei Shimizu A, Shiratori I, Horii K, Waga I eYGFP, eYGFPuv, eYGPdp, YGFPdp, YGFPuv CpYGFP
2017 Angewandte Chemie International Edition A General Mechanism of Photoconversion of Green-to-Red Fluorescent Proteins Based on Blue and Infrared Light Reduces Phototoxicity in Live-Cell Single-Molecule Imaging Turkowyd B, Balinovic A, Virant D, Carnero Hgg, Caldana F, Endesfelder M, Bourgeois D, Endesfelder U Dendra2-T69A, mEos2-A69T
2017 Scientific Reports ShadowY: a dark yellow fluorescent protein for FLIM-based FRET measurement Murakoshi H, Shibata Ace ShadowY, sREACh1, sREACh2
2017 Nature Communications Improved split fluorescent proteins for endogenous protein labeling Feng S, Sekine S, Pessino V, Li H, Leonetti Md, Huang B sfCherry2
2017 Scientific Reports In vivo mouse and live cell STED microscopy of neuronal actin plasticity using far-red emitting fluorescent proteins Wegner W, Ilgen P, Gregor C, Van Dort J, Mott Ac, Steffens H, Willig Ki mNeptune2
2017 Scientific Reports Characterization of a spectrally diverse set of fluorescent proteins as FRET acceptors for mTurquoise2 Mastop M, Bindels Ds, Shaner Nc, Postma M, Gadella Twj, Goedhart J mCherry, mKO2, mKO&kappa;, mNeonGreen, mScarlet-I, mTurquoise2, sREACh
2017 The Journal of Physical Chemistry B No Photon Wasted: An Efficient and Selective Singlet Oxygen Photosensitizing Protein Westberg M, Bregnhøj M, Etzerodt M, Ogilby Pr SOPP2, SOPP3
2017 Nature Methods Systematic characterization of maturation time of fluorescent proteins in living cells Balleza E, Kim Jm, Cluzel P mGFPmut3 Emerald, EYFP, GFPmut2, GFPmut3, Katushka, mCherry2, mClover3, mEmerald, mEYFP, moxGFP, moxVenus, mRuby3, mScarlet-I, mTurquoise, mTurquoise2, mVenus, mVenus-Q69M, SCFP3A, Superfolder GFP, SYFP2, Venus
2017 Biophysical Journal Two Distinct Fluorescence States of the Ligand-Induced Green Fluorescent Protein UnaG Shitashima Y, Shimozawa T, Kumagai A, Miyawaki A, Asahi T UnaG
2017 Journal of Biomedical Photonics & Engineering Reversible photobleaching of photoconvertible SAASoti-FP Solovyev I, Gavshina A, Savitsky A V127T SAASoti
2018 Integrative Biology Enhancing fluorescent protein photostability through robot-assisted photobleaching Wiens Md, Hoffmann F, Chen Y, Campbell Re Citrine2 mCitrine
2018 Integrative Biology Directed evolution of excited state lifetime and brightness in FusionRed using a microfluidic sorter Manna P, Hung S-T, Mukherjee S, Friis P, Simpson Dm, Lo Mn, Palmer Ae, Jimenez R FR-1, FusionRed-M FusionRed
2018 The Analyst Spying on protein interactions in living cells with reconstituted scarlet light Wang S, Ding M, Xue B, Hou Y, Sun Y mAmetrine, mScarlet-I
2018 Physical Chemistry Chemical Physics A proton transfer network that generates deprotonated tyrosine is a key to producing reactive oxygen species in phototoxic KillerRed protein Lee W, Kim I, Rhee Ym KillerRed
2018 Scientific Reports A Novel Ultra-Stable, Monomeric Green Fluorescent Protein For Direct Volumetric Imaging of Whole Organs Using CLARITY Scott Dj, Gunn Nj, Yong Kj, Wimmer Vc, Veldhuis Na, Challis Lm, Haidar M, Petrou S, Bathgate Rad, Griffin Mdw muGFP Superfolder GFP, usGFP
2018 BMC Biology A genetically encoded Ca2+ indicator based on circularly permutated sea anemone red fluorescent protein eqFP578 Shen Y, Dana H, Abdelfattah As, Patel R, Shea J, Molina Rs, Rawal B, Rancic V, Chang Y-F, Wu L, Chen Y, Qian Y, Wiens Md, Hambleton N, Ballanyi K, Hughes Te, Drobizhev M, Kim Ds, Koyama M, Schreiter Er, Campbell Re jRGECO1a
2018 PLOS ONE Optimization of mNeonGreen for Homo sapiens increases its fluorescent intensity in mammalian cells Tanida-Miyake E, Koike M, Uchiyama Y, Tanida I mNeonGreen
2018 Scientific Reports Red fluorescent cAMP indicator with increased affinity and expanded dynamic range Ohta Y, Furuta T, Nagai T, Horikawa K R-FlincA
2018 Structure Crystal Structure of Green Fluorescent Protein Clover and Design of Clover-Based Redox Sensors Campbell Bc, Petsko Ga, Liu Cf Clover
2018 Nature Chemical Biology A robotic multidimensional directed evolution approach applied to fluorescent voltage reporters Piatkevich Kd, Jung Ee, Straub C, Linghu C, Park D, Suk H-J, Hochbaum Dr, Goodwin D, Pnevmatikakis E, Pak N, Kawashima T, Yang C-T, Rhoades Jl, Shemesh O, Asano S, Yoon Y-G, Freifeld L, Saulnier Jl, Riegler C, Engert F, Hughes T, Drobizhev M, Szabo B, Ahrens Mb, Flavell Sw, Sabatini Bl, Boyden Es miRFP
2018 Cell Chemical Biology Acid-Tolerant Monomeric GFP from Olindias formosa Shinoda H, Ma Y, Nakashima R, Sakurai K, Matsuda T, Nagai T dfGFP, Gamillus, Gamillus0.1, Gamillus0.2, Gamillus0.3, Gamillus0.4, Gamillus0.5
2018 ChemPhotoChem Fluorescent Flavoprotein Heterodimers: Combining Photostability with Singlet Oxygen Generation Rodríguez-Pulido A, Torra J, Mejías Sh, Cortajarena Al, Ruiz-González R, Nonell S, Flors C miniSOG Q103V
2018 Nature Chemical Biology Direct multiplex imaging and optogenetics of Rho GTPases enabled by near-infrared FRET Shcherbakova Dm, Cox Cammer N, Huisman Tm, Verkhusha Vv, Hodgson L miRFP720
2018 BMC Biology Green monomeric photosensitizing fluorescent protein for photo-inducible protein inactivation and cell ablation Riani Yd, Matsuda T, Takemoto K, Nagai T SuperNova Green
2018 Biophysical Journal Photophysical Behavior of mNeonGreen, an Evolutionarily Distant Green Fluorescent Protein Steiert F, Petrov Ep, Schultz P, Schwille P, Weidemann T mNeonGreen
2018 Chemistry - A European Journal Primed Conversion: The New Kid on the Block for Photoconversion Mohr Ma, Pantazis P mEos2-A69T
2018 Journal of Biological Engineering Engineering a palette of eukaryotic chromoproteins for bacterial synthetic biology Liljeruhm J, Funk Sk, Tietscher S, Edlund Ad, Jamal S, Wistrand-Yuen P, Dyrhage K, Gynnå A, Ivermark K, Lövgren J, Törnblom V, Virtanen A, Lundin Er, Wistrand-Yuen E, Forster Ac amilCP-Orange, amilCP-Pink, fwYellow, scOrange, tsPurple aeBlue, amFP486, amilCP, amilGFP, asulCP, cjBlue, eforCP, gfasCP, meffRFP, Rtms5, spisCP
2018 ACS Chemical Biology A spontaneously blinking fluorescent protein for simple single laser super-resolution live cell imaging Arai Y, Takauchi H, Ogami Y, Fujiwara S, Nakano M, Matsuda T, Nagai T SPOON
2018 Scientific Reports Optimization of sample preparation and green color imaging using the mNeonGreen fluorescent protein in bacterial cells for photoactivated localization microscopy Stockmar I, Feddersen H, Cramer K, Gruber S, Jung K, Bramkamp M, Shin Jy Dronpa, mNeonGreen
2018 Nature Methods Fast reversibly photoswitching red fluorescent proteins for live-cell RESOLFT nanoscopy Pennacchietti F, Serebrovskaya Eo, Faro Ar, Shemyakina Ii, Bozhanova Ng, Kotlobay Aa, Gurskaya Ng, Bodén A, Dreier J, Chudakov Dm, Lukyanov Ka, Verkhusha Vv, Mishin As, Testa I rsFusionRed1, rsFusionRed2, rsFusionRed3
2018 Scientific Reports Optimal fluorescent protein tags for quantifying protein oligomerization in living cells Dunsing V, Luckner M, Zühlke B, Petazzi Ra, Herrmann A, Chiantia S mCardinal, mCherry, mCherry2, mEGFP, mEYFP, mRuby3, mScarlet, mScarlet-I
2018 Scientific Reports A superfolder variant of pH-sensitive pHluorin for in vivo pH measurements in the endoplasmic reticulum Reifenrath M, Boles E Superfolder pHluorin
2018 Journal of Physics D: Applied Physics The 2018 correlative microscopy techniques roadmap Ando T, Bhamidimarri Sp, Brending N, Colin-York H, Collinson L, De Jonge N, De Pablo Pj, Debroye E, Eggeling C, Franck C, Fritzsche M, Gerritsen H, Giepmans Bng, Grunewald K, Hofkens J, Hoogenboom Jp, Janssen Kpf, Kaufman R, Klumpermann J, Kurniawan N, Kusch J, Liv N, Parekh V, Peckys Db, Rehfeldt F, Reutens Dc, Roeffaers Mbj, Salditt T, Schaap Iat, Schwarz Us, Verkade P, Vogel Mw, Wagner R, Winterhalter M, Yuan H, Zifarelli G mEos4a, mEos4b
2018 Cell Chemical Biology Imaging-Based Screening Platform Assists Protein Engineering Fabritius A, Ng D, Kist Am, Erdogan M, Portugues R, Griesbeck O mCarmine
2018 Scientific Reports Bright GFP with subnanosecond fluorescence lifetime Mamontova Av, Solovyev Id, Savitsky Ap, Shakhov A, Lukyanov Ka, Bogdanov Am BrUSLEE
2018 Journal of the American Chemical Society Identification of PAmKate as a Red Photoactivatable Fluorescent Protein for Cryogenic Super-Resolution Imaging Dahlberg Pd, Sartor Am, Wang J, Saurabh S, Shapiro L, Moerner We PAmKate
2018 Journal of Neuroscience Methods Characterization of the neuroinvasive profile of a pseudorabies virus recombinant expressing the mTurquoise2 reporter in single and multiple injection experiments Hogue Ib, Card Jp, Rinaman L, Staniszewska Goraczniak H, Enquist Lw mTurquoise2
2018 Scientific Reports moxMaple3: a Photoswitchable Fluorescent Protein for PALM and Protein Highlighting in Oxidizing Cellular Environments Kaberniuk Aa, Mohr Ma, Verkhusha Vv, Snapp El moxMaple3 mMaple3
2018 Scientific Reports An optogenetic toolbox of LOV-based photosensitizers for light-driven killing of bacteria Endres S, Wingen M, Torra J, Ruiz-González R, Polen T, Bosio G, Bitzenhofer Nl, Hilgers F, Gensch T, Nonell S, Jaeger K-E, Drepper T Pp2 FbFP, Pp2FbFP L30M
2018 PLOS ONE Thy1 transgenic mice expressing the red fluorescent calcium indicator jRGECO1a for neuronal population imaging in vivo Dana H, Novak O, Guardado-Montesino M, Fransen Jw, Hu A, Borghuis Bg, Guo C, Kim Ds, Svoboda K jRGECO1a
2018 Scientific Reports Monomerization of the photoconvertible fluorescent protein SAASoti by rational mutagenesis of single amino acids Solovyev Id, Gavshina Av, Katti As, Chizhik Ai, Vinokurov Lm, Lapshin Gd, Ivashina Tv, Khrenova Mg, Kireev Ii, Gregor I, Enderlein J, Savitsky Ap V127T SAASoti
2018 Biochimica et Biophysica Acta (BBA) - Molecular Cell Research Far-red acclimating cyanobacterium as versatile source for bright fluorescent biomarkers Ding W-L, Hou Y-N, Tan Z-Z, Jiang S-P, Miao D, Losi A, Gärtner W, Scheer H, Zhao K-H BDFP1.6
2018 Nature Communications Near-infrared STED nanoscopy with an engineered bacterial phytochrome Kamper M, Ta H, Jensen Na, Hell Sw, Jakobs S SNIFP
2018 Proceedings of the National Academy of Sciences Monomerization of far-red fluorescent proteins Wannier Tm, Gillespie Sk, Hutchins N, Mcisaac Rs, Wu S-Y, Shen Y, Campbell Re, Brown Ks, Mayo Sl HcRed7, mGinger1, mGinger2, mKelly1, mKelly2
2018 Protein Science Spectral and structural analysis of a red fluorescent protein from Acropora digitifera Kim Se, Hwang Ky, Nam Kh AdRed, AdRed-C148S
2018 Journal of Neuroscience Methods Seeing the long tail: A novel green fluorescent protein, SiriusGFP, for ultra long timelapse imaging Zhong S, Rivera-Molina F, Rivetta A, Toomre D, Santos-Sacchi J, Navaratnam D SiriusGFP
2019 Journal of Physics D: Applied Physics All-optical crosstalk-free manipulation and readout of Chronos-expressing neurons Soor Ns, Quicke P, Howe Cl, Pang Kt, Neil Maa, Schultz Sr, Foust Aj Chronos
2019 Journal of Biological Chemistry The kinetic mechanisms of fast-decay red-fluorescent genetically encoded calcium indicators Kerruth S, Coates C, Dürst Cd, Oertner Tg, Török K jRGECO1a
2019 Nature Communications Smallest near-infrared fluorescent protein evolved from cyanobacteriochrome as versatile tag for spectral multiplexing Oliinyk Os, Shemetov Aa, Pletnev S, Shcherbakova Dm, Verkhusha Vv miRFP670nano
2019 Plant Direct I see the light! Fluorescent proteins suitable for cell wall/apoplast targeting in Nicotiana benthamiana leaves Stoddard A, Rolland V Citrine, Gamillus, mCherry, mCitrine, mEYFP, mNeonGreen, mTurquoise2, pH-tdGFP, Superfolder GFP, TagRFP
2019 Communications Biology Collective cell migration of Dictyostelium without cAMP oscillations at multicellular stages Hashimura H, Morimoto Yv, Yasui M, Ueda M Flamindo2
2019 Scientific Reports Tailing miniSOG: structural bases of the complex photophysics of a flavin-binding singlet oxygen photosensitizing protein Torra J, Lafaye C, Signor L, Aumonier S, Flors C, Shu X, Nonell S, Gotthard G, Royant A miniSOG
2019 Molecular Microbiology Superfolder mTurquoise2ox optimized for the bacterial periplasm allows high efficiency in vivo FRET of cell division antibiotic targets Meiresonne Ny, Consoli E, Mertens Lmy, Chertkova Ao, Goedhart J, Den Blaauwen T Superfolder mTurquoise2, Superfolder mTurquoise2 ox
2019 ChemBioChem Identification and Spectroscopic Characterization of mNeonGreen as a pH-Dependent, Turn-on Fluorescent Protein Sensor for Chloride Tutol J, Kam H, Dodani S mNeonGreen
2019 Nature Methods FPbase: a community-editable fluorescent protein database Lambert Tj
2019 ChemBioChem A Large Stokes Shift Fluorescent Protein Constructed from the Fusion of Red Fluorescent mCherry and Far‐Red Fluorescent BDFP1.6 Zhao Bq, Ding Wl, Tan Zz, Tang Qy, Zhao Kh BDFP2.0
2019 Biophysical Journal Understanding the Fluorescence Change in Red Genetically Encoded Calcium Ion Indicators Molina Rs, Qian Y, Wu J, Shen Y, Campbell Re, Drobizhev M, Hughes Te CAR-GECO1, jRCaMP1a, jREX-GECO1, jRGECO1a, K-GECO1, O-GECO1, REX-GECO1, R-GECO1, R-GECO1.2
2019 Molecular Reproduction and Development Testicular somatic cells in the stony coral Euphyllia ancora express an endogenous green fluorescent protein Chiu Yl, Shikina S, Chang Cf EaGFP
2019 Methods in Molecular Biology The Photoconvertible Fluorescent Protein Dendra2 Tag as a Tool to Investigate Intracellular Protein Dynamics Lešková A, Kusá Z, Labajová M, Krausko M, Jásik J Dendra2
2019 International Journal of Biological Macromolecules Crystal structure of the blue fluorescent protein with a Leu-Leu-Gly tri-peptide chromophore derived from the purple chromoprotein of Stichodactyla haddoni Chang H-Y, Ko T-P, Chang Y-C, Huang K-F, Lin C-Y, Chou H-Y, Chiang C-Y, Tsai H-J shBFP-N158S/L173I, shCP
2019 Nature Methods High-performance calcium sensors for imaging activity in neuronal populations and microcompartments Dana H, Sun Y, Mohar B, Hulse Bk, Kerlin Am, Hasseman Jp, Tsegaye G, Tsang A, Wong A, Patel R, Macklin Jj, Chen Y, Konnerth A, Jayaraman V, Looger Ll, Schreiter Er, Svoboda K, Kim Ds GCaMP6f
2019 Aequorea victoria’s secrets Lambert Gg, Depernet H, Gotthard G, Schultz Dt, Navizet I, Lambert T, Bindels Ds, Levesque V, Moffatt Jn, Salih A, Royant A, Shaner Nc AausFP1, AausFP2, AausFP3, AausFP4, AausGFP, AvicFP1, AvicFP2, AvicFP3, AvicFP4, mAvicFP1
2019 Nature Methods Mechanistic investigation of mEos4b reveals a strategy to reduce track interruptions in sptPALM De Zitter E, Thédié D, Mönkemöller V, Hugelier S, Beaudouin J, Adam V, Byrdin M, Van Meervelt L, Dedecker P, Bourgeois D mEos4b
2019 International Journal of Molecular Sciences Novel Phototransformable Fluorescent Protein SAASoti with Unique Photochemical Properties Solovyev Id, Gavshina Av, Savitsky Ap V127T SAASoti
2019 Scientific Reports ShadowR: a novel chromoprotein with reduced non-specific binding and improved expression in living cells Murakoshi H, Horiuchi H, Kosugi T, Onda M, Sato A, Koga N, Nabekura J ShadowR
2019 Communications Biology Bright split red fluorescent proteins for the visualization of endogenous proteins and synapses Feng S, Varshney A, Coto Villa D, Modavi C, Kohler J, Farah F, Zhou S, Ali N, Müller Jd, Van Hoven Mk, Huang B sfCherry3C
2019 Biochimica et Biophysica Acta (BBA) - Molecular Cell Research Design of small monomeric and highly bright near-infrared fluorescent proteins Li X-D, Tan Z-Z, Ding W-L, Hou Y-N, Kong C-D, Zhao B-Q, Zhao K-H BDFP1.8
2019 Nano Letters Fast Super-Resolution Imaging Technique and Immediate Early Nanostructure Capturing by a Photoconvertible Fluorescent Protein Zhang M, Fu Z, Li C, Liu A, Peng D, Xue F, He W, Gao S, Xu F, Xu D, Yuan L, Zhang F, Xu Z, Xu T, Xu P pcStar
2019 Journal of Agricultural and Food Chemistry Engineered Arabidopsis Blue Light Receptor LOV Domain Variants with Improved Quantum Yield, Brightness, and Thermostability Ko S, Hwang B, Na J-H, Lee J, Jung St BR1, SH3
2019 Nature Methods mEosEM withstands osmium staining and Epon embedding for super-resolution CLEM Fu Z, Peng D, Zhang M, Xue F, Zhang R, He W, Xu T, Xu P mEosEM
2019 A photostable monomeric superfolder GFP Valbuena F, Fizgerald I, Strack Rl, Andruska N, Smith L, Glick Bs mScarlet2-I, msGFP2
2019 Nature Communications Sub-nanomolar sensitive GZnP3 reveals TRPML1-mediated neuronal Zn2+ signals Minckley Tf, Zhang C, Fudge Dh, Dischler Am, Lejeune Kd, Xu H, Qin Y GZnP3
2019 Scientific Reports mRhubarb: Engineering of monomeric, red-shifted, and brighter variants of iRFP using structure-guided multi-site mutagenesis Rogers Oc, Johnson Dm, Firnberg E mRhubarb713, mRhubarb719, mRhubarb720
2019 ACS Catalysis Robust and Versatile Host Protein for the Design and Evaluation of Artificial Metal Centers Fischer J, Renn D, Quitterer F, Radhakrishnan A, Liu M, Makki A, Ghorpade S, Rueping M, Arold St, Groll M, Eppinger J mTFP*
2019 PLOS ONE Non-invasive in vivo imaging of UCP1 expression in live mice via near-infrared fluorescent protein iRFP720 Fukuda A, Honda S, Fujioka N, Sekiguchi Y, Mizuno S, Miwa Y, Sugiyama F, Hayashi Y, Nishimura K, Hisatake K iRFP720
2019 Integrative Biology Erratum: Directed evolution of excited state lifetime and brightness in FusionRed using a microfluidic sorter Manna P, Hung S-T, Mukherjee S, Friis P, Simpson Dm, Lo M, Palmer Ae, Jimenez R FusionRed-M
2019 Protein &amp; Peptide Letters aeBlue Chromoprotein Color is Temperature Dependent Tamayo-Nuñez J, De La Mora J, Padilla-Vaca F, Vargas-Maya Ni, Rangel-Serrano , Anaya-Velázquez F, Páramo-Pérez I, Reyes-Martínez Je, España-Sánchez Bl, Franco B aeBlue
2019 Marine Biotechnology Expression and Characterization of a Bright Far-red Fluorescent Protein from the Pink-Pigmented Tissues of Porites lobata Bridges Mc, Woodley Cm, Peters Ec, May La, Galloway Sb plobRFP
2020 Nature Coupling delay controls synchronized oscillation in the segmentation clock Yoshioka-Kobayashi K, Matsumiya M, Niino Y, Isomura A, Kori H, Miyawaki A, Kageyama R Achilles
2020 Nature Communications A set of monomeric near-infrared fluorescent proteins for multicolor imaging across scales Matlashov Me, Shcherbakova Dm, Alvelid J, Baloban M, Pennacchietti F, Shemetov Aa, Testa I, Verkhusha Vv emiRFP670, emiRFP703, miRFP670-2, miRFP680, miRFP682, miRFP702, miRFP713
2020 Nature Communications Bright ligand-activatable fluorescent protein for high-quality multicolor live-cell super-resolution microscopy Kwon J, Park J-S, Kang M, Choi S, Park J, Kim Gt, Lee C, Cha S, Rhee H-W, Shim S-H UnaG
2020 Biochemical and Biophysical Research Communications Live-cell nanoscopy with spontaneous blinking of conventional green fluorescent proteins Gavrikov As, Baranov Ms, Mishin As AausFP1, mAvicFP1
2020 PLOS ONE Comparing the performance of mScarlet-I, mRuby3, and mCherry as FRET acceptors for mNeonGreen Mccullock Tw, Maclean Dm, Kammermeier Pj mCherry, mClover3, mNeonGreen, mRuby3, mScarlet, mScarlet-I
2020 Cell Chemical Biology Targeted In Situ Protein Diversification and Intra-organelle Validation in Mammalian Cells Erdogan M, Fabritius A, Basquin J, Griesbeck O mCRISPRed
2020 Two new coral fluorescent proteins of distinct colors for sharp visualization of cell-cycle progression Ando R, Sakaue-Sawano A, Shoda K, Miyawaki A AzaleaB5, h2-3
2020 Nature Communications A rationally enhanced red fluorescent protein expands the utility of FRET biosensors Mo Gch, Posner C, Rodriguez Ea, Sun T, Zhang J super-TagRFP
2020 Fungal Genetics and Biology Broadening the spectrum of fluorescent protein tools for use in the encapsulated human fungal pathogen Cryptococcus neoformans Spencer Gwk, Chua Smh, Erpf Pe, Wizrah Msi, Dyba Tg, Condon Nd, Fraser Ja mTurquoise2
2020 Journal of Agricultural and Food Chemistry Discovery of Novel Pseudomonas putida Flavin-Binding Fluorescent Protein Variants with Significantly Improved Quantum Yield Ko S, Jeon H, Yoon S, Kyung M, Yun H, Na J-H, Jung St KOFP-7
2020 Journal of the American Chemical Society Mechanistic Investigations of Green mEos4b Reveal a Dynamic Long-Lived Dark State De Zitter E, Ridard J, Thédié D, Adam V, Lévy B, Byrdin M, Gotthard G, Van Meervelt L, Dedecker P, Demachy I, Bourgeois D mEos4b
2020 Angewandte Chemie International Edition A Far‐Red Emitting Fluorescent Chemogenetic Reporter for In Vivo Molecular Imaging Li C, Tebo Ag, Thauvin M, Plamont Ma, Volovitch M, Morin X, Vriz S, Gautier A frFAST
2020 Biochemistry Engineering of a Brighter Variant of the FusionRed Fluorescent Protein Using Lifetime Flow Cytometry and Structure-Guided Mutations Mukherjee S, Hung S-T, Douglas N, Manna P, Thomas C, Ekrem A, Palmer Ae, Jimenez R FusionRed-MQV
2020 ACS Omega De Novo Designed Heterochiral Blue Fluorescent Protein Prakash V, Ranbhor R, Ramakrishnan V BP02
2020 Science Advances Versatile phenotype-activated cell sorting Lee J, Liu Z, Suzuki Ph, Ahrens Jf, Lai S, Lu X, Guan S, St-Pierre F mGold mCitrine, mVenus, YPet
2020 Photochemical &amp; Photobiological Sciences A thermostable flavin-based fluorescent protein from Chloroflexus aggregans: a framework for ultra-high resolution structural studies Nazarenko Vv, Remeeva A, Yudenko A, Kovalev K, Dubenko A, Goncharov Im, Kuzmichev P, Rogachev Av, Buslaev P, Borshchevskiy V, Mishin A, Dhoke Gv, Schwaneberg U, Davari Md, Jaeger K-E, Krauss U, Gordeliy V, Gushchin I CagFbFP
2020 Proceedings of the National Academy of Sciences mGreenLantern: a bright monomeric fluorescent protein with rapid expression and cell filling properties for neuronal imaging Campbell Bc, Nabel Em, Murdock Mh, Lao-Peregrin C, Tsoulfas P, Blackmore Mg, Lee Fs, Liston C, Morishita H, Petsko Ga mGreenLantern
2020 International Journal of Molecular Sciences Genetically Encoded Red Photosensitizers with Enhanced Phototoxicity Gorbachev Da, Staroverov Db, Lukyanov Ka, Sarkisyan Ks SuperNova2
2020 Analytical Biochemistry Overcoming chromoprotein limitations by engineering a red fluorescent protein Bao L, Menon Pnk, Liljeruhm J, Forster Ac mRFP1_Magenta, mRFP1_Pink, mRFP1_Violet, mRFP1_Yellow amFP486, amilCP, amilGFP, asulCP, cjBlue, fwYellow, gfasCP, mRFP1, mRFP1-Q66C, scOrange
2020 Proceedings of the National Academy of Sciences Directionality of light absorption and emission in representative fluorescent proteins Myšková J, Rybakova O, Brynda J, Khoroshyy P, Bondar A, Lazar J EGFP, mCherry, mEos4b, mTurquoise2
2020 Communications Biology An improved fluorescent tag and its nanobodies for membrane protein expression, stability assay, and purification Cai H, Yao H, Li T, Hutter Caj, Li Y, Tang Y, Seeger Ma, Li D Thermostable Green Protein
2021 Biomedical Optics Express Fluorescent bacterial biosensor E. coli/pTdcR-TurboYFP sensitive to terahertz radiation Serdyukov Ds, Goryachkovskaya Tn, Mescheryakova Ia, Kuznetsov Sa, Popik Vm, Peltek Se TurboYFP
2021 Genetically Engineered Mice for Combinatorial Cardiovascular Optobiology Lee Fk, Lee Jc, Shui B, Reining S, Jibilian M, Small Dm, Jones Js, Allan-Rahill Nh, Lamont Mre, Rizzo Ma, Tajada S, Navedo Mf, Santana Lf, Nishimura N, Kotlikoff Mi
2021 Microscopy A photoswitchable fluorescent protein for hours-time-lapse and sub-second-resolved super-resolution imaging Wazawa T, Noma R, Uto S, Sugiura K, Washio T, Nagai T Kohinoor2.0
2021 Frontiers in Molecular Biosciences Local Electric Field Controls Fluorescence Quantum Yield of Red and Far-Red Fluorescent Proteins Drobizhev M, Molina Rs, Callis Pr, Scott Jn, Lambert Gg, Salih A, Shaner Nc, Hughes Te mScarlet
2021 Plant and Cell Physiology ClearSeeAlpha: Advanced Optical Clearing for Whole-Plant Imaging Kurihara D, Mizuta Y, Nagahara S, Higashiyama T TagRFP
2021 Nature Communications pHmScarlet is a pH-sensitive red fluorescent protein to monitor exocytosis docking and fusion steps Liu A, Huang X, He W, Xue F, Yang Y, Liu J, Chen L, Yuan L, Xu P pHmScarlet
2021 ACS Nano The Positive Switching Fluorescent Protein Padron2 Enables Live-Cell Reversible Saturable Optical Linear Fluorescence Transitions (RESOLFT) Nanoscopy without Sequential Illumination Steps Konen T, Stumpf D, Grotjohann T, Jansen I, Bossi M, Weber M, Jensen N, Hell Sw, Jakobs S Padron2
2021 eLife High-fidelity, efficient, and reversible labeling of endogenous proteins using CRISPR-based designer exon insertion Zhong H, Ceballos Cc, Massengill Ci, Muniak Ma, Ma L, Qin M, Petrie Sk, Mao T mNeonGreen, mTurquoise2
2021 Brain-wide analysis of the supraspinal connectome reveals anatomical correlates to functional recovery after spinal injury Wang Z, Romanski A, Mehra V, Wang Y, Campbell Bc, Petsko Ga, Tsoulfas P, Blackmore M mGreenLantern
2021 The Journal of Physical Chemistry B Three Simultaneous Fluorescence Resonance Energy Transfer Processes and Structural Relaxation of Enhanced Yellow Fluorescent Protein Observed by Picosecond Time-Resolved Fluorescence Anisotropy Tsubota H, Takayama A, Takeda Y, Yamada N, Hosoi H mEYFP
2021 Biochemistry Site-Specific Fragmentation of Green Fluorescent Protein Induced by Blue Light Heckmeier Pj, Langosch D sg25, Superfolder GFP
2021 Rapid Directed Molecular Evolution of Fluorescent Proteins in Mammalian Cells Babakhanova S, Jung Ee, Namikawa K, Zhang H, Wang Y, Subach Om, Korzhenevskiy Da, Rakitina Tv, Xiao X, Wang W, Shi J, Drobizhev M, Park D, Eisenhard L, Tang H, Köster Rw, Subach Fv, Boyden Es, Piatkevich Kd miRFP2, phiLOV2.1, TagRFP658
2021 ACS Sensors tdLanYFP, a Yellow, Bright, Photostable, and pH-Insensitive Fluorescent Protein for Live-Cell Imaging and Förster Resonance Energy Transfer-Based Sensing Strategies Bousmah Y, Valenta H, Bertolin G, Singh U, Nicolas V, Pasquier H, Tramier M, Merola F, Erard M tdLanYFP dLanYFP
2021 eLife Genetically engineered mice for combinatorial cardiovascular optobiology Lee Fk, Lee Jc, Shui B, Reining S, Jibilian M, Small Dm, Jones Js, Allan-Rahill Nh, Lamont Mre, Rizzo Ma, Tajada S, Navedo Mf, Santana Lf, Nishimura N, Kotlikoff Mi mVermilion
2021 International Journal of Molecular Sciences LSSmScarlet, dCyRFP2s, dCyOFP2s and CRISPRed2s, Genetically Encoded Red Fluorescent Proteins with a Large Stokes Shift Subach Om, Vlaskina Av, Agapova Yk, Dorovatovskii Pv, Nikolaeva Ay, Ivashkina Oi, Popov Vo, Piatkevich Kd, Khrenova Mg, Smirnova Ta, Boyko Km, Subach Fv CRISPRed2s, dCyOFP2s, dCyRFP2s, LSSmScarlet
2021 Protein Science Rapid directed molecular evolution of fluorescent proteins in mammalian cells Babakhanova S, Jung Ee, Namikawa K, Zhang H, Wang Y, Subach Om, Korzhenevskiy Da, Rakitina Tv, Xiao X, Wang W, Shi J, Drobizhev M, Park D, Eisenhard L, Tang H, Köster Rw, Subach Fv, Boyden Es, Piatkevich Kd phiLOV3
2022 Chemical Science Generation of bright monomeric red fluorescent proteins <i>via</i> computational design of enhanced chromophore packing Legault S, Fraser-Halberg Dp, Mcanelly Rl, Eason Mg, Thompson Mc, Chica Ra mSandy2
2022 Directed evolution of a bright variant of mCherry: Suppression of non-radiative decay by fluorescence lifetime selections Mukherjee S, Manna P, Hung S-T, Vietmeyer F, Friis P, Palmer A, Jimenez R mCherry-XL
2022 International Journal of Molecular Sciences The mRubyFT Protein, Genetically Encoded Blue-to-Red Fluorescent Timer Subach Om, Tashkeev A, Vlaskina Av, Petrenko De, Gaivoronskii Fa, Nikolaeva Ay, Ivashkina Oi, Anokhin Kv, Popov Vo, Boyko Km, Subach Fv mRubyFT
2022 Acta Crystallographica Section D Structural Biology Over the rainbow: structural characterization of the chromoproteins gfasPurple, amilCP, spisPink and eforRed Ahmed Fh, Caputo At, French Ng, Peat Ts, Whitfield J, Warden Ac, Newman J, Scott C amilCP, eforCP, gfasCP, spisCP
2022 Protein Science Structure‐based analysis and evolution of a monomerized red‐colored chromoprotein from the <i>Olindias formosa</i> jellyfish Zhai L, Nakashima R, Shinoda H, Ike Y, Matsuda T, Nagai T M-Velour-537, M-Velour-553, M-Velour-554, ofCP, O-Velour, R-Velour
2022 Nature Biotechnology A highly photostable and bright green fluorescent protein Hirano M, Ando R, Shimozono S, Sugiyama M, Takeda N, Kurokawa H, Deguchi R, Endo K, Haga K, Takai-Todaka R, Inaura S, Matsumura Y, Hama H, Okada Y, Fujiwara T, Morimoto T, Katayama K, Miyawaki A CU17S, (n1)oxStayGold, (n1)StayGold, oxStayGold, StayGold, tdoxStayGold, tdStayGold
2022 Nature Methods Single-domain near-infrared protein provides a scaffold for antigen-dependent fluorescent nanobodies Oliinyk Os, Baloban M, Clark Cl, Carey E, Pletnev S, Nimmerjahn A, Verkhusha Vv miRFP670nano3
2022 The Journal of Physical Chemistry B Directed Evolution of a Bright Variant of mCherry: Suppression of Nonradiative Decay by Fluorescence Lifetime Selections Mukherjee S, Manna P, Hung S-T, Vietmeyer F, Friis P, Palmer Ae, Jimenez R mCherry-XL
2022 Scientific Reports Dual-expression system for blue fluorescent protein optimization Papadaki S, Wang X, Wang Y, Zhang H, Jia S, Liu S, Yang M, Zhang D, Jia J-M, Köster Rw, Namikawa K, Piatkevich Kd Electra1, Electra2 EBFP2, mBlueberry2, mTagBFP2
2022 eLife Brain-wide analysis of the supraspinal connectome reveals anatomical correlates to functional recovery after spinal injury Wang Z, Romanski A, Mehra V, Wang Y, Brannigan M, Campbell Bc, Petsko Ga, Tsoulfas P, Blackmore Mg mGreenLantern
2022 Frontiers in Bioengineering and Biotechnology mCherry contains a fluorescent protein isoform that interferes with its reporter function Fages-Lartaud M, Tietze L, Elie F, Lale R, Hohmann-Marriott Mf mCherry_M10L
2022 Development mBeRFP: a versatile fluorescent tool to enhance multichannel live imaging and its applications Martin E, Suzanne M mBeRFP
2022 International Journal of Molecular Sciences LSSmScarlet2 and LSSmScarlet3, Chemically Stable Genetically Encoded Red Fluorescent Proteins with a Large Stokes’ Shift Subach Om, Vlaskina Av, Agapova Yk, Piatkevich Kd, Patrushev Mv, Samygina Vr, Subach Fv LSSmScarlet2, LSSmScarlet3
2022 Designed active-site library reveals thousands of functional GFP variants Weinstein Jy, Gomez Aldaravi Cm, Lipsh-Sokolik R, Hoch Sy, Liebermann D, Nevo R, Weissman H, Petrovich-Kopitman E, Margulies D, Ivankov D, Mccandlish D, Fleishman Sj htFuncLib_acid.1, htFuncLib_acid.2, htFuncLib_acid.3, htFuncLib_acid.4, htFuncLib_acid.5, htFuncLib_acid.6, htFuncLib_basic.1, htFuncLib_basic.2, htFuncLib_basic.3, htFuncLib_basic.4, htFuncLib_basic.6, htFuncLib_bleach.1, htFuncLib_bleach.2, htFuncLib_bleach.3, htFuncLib_bleach.4, htFuncLib_bleach.5, htFuncLib_bleach.6, htFuncLib_em-blue-shift.1, htFuncLib_em-blue-shift.2, htFuncLib_fast.1, htFuncLib_fast.2, htFuncLib_fast.3, htFuncLib_fast.4, htFuncLib_mid.10, htFuncLib_mid.11, htFuncLib_mid.12, htFuncLib_mid.13, htFuncLib_mid.2, htFuncLib_mid.3, htFuncLib_mid.4, htFuncLib_mid.5, htFuncLib_mid.6, htFuncLib_mid.7, htFuncLib_mid.8, htFuncLib_mid.9, htFuncLib_photostable.1, htFuncLib_photostable.2, htFuncLib_sf:acid.3, htFuncLib_sf:acid.4, htFuncLib_sf:acid.5, htFuncLib_sf:bleach.1, htFuncLib_sf:bleach.2, htFuncLib_sf:bleach.3, htFuncLib_sf:em-blue-shift.1, htFuncLib_sf:em-blue-shift.2, htFuncLib_sf:fast.3, htFuncLib_sf:mid.10, htFuncLib_sf:mid.11, htFuncLib_sf:mid.12, htFuncLib_sf:mid.5, htFuncLib_sf:mid.7, htFuncLib_sf:mid.9, htFuncLib_sf:photostable.1, htFuncLib_sf:photostable.2, htFuncLib_sf:thermo.2, htFuncLib_sf:thermo.9, htFuncLib_slow.1, htFuncLib_slow.2, htFuncLib_slow.3, htFuncLib_slow.4, htFuncLib_slow.5, htFuncLib_thermo.1, htFuncLib_thermo.2, htFuncLib_thermo.3, htFuncLib_thermo.4, htFuncLib_thermo.5, htFuncLib_thermo.6, htFuncLib_thermo.8, htFuncLib_thermo.9, PROSS-eGFP
2022 Frontiers in Bioengineering and Biotechnology Enhanced small green fluorescent proteins as a multisensing platform for biosensor development Liang G-T, Lai C, Yue Z, Zhang H, Li D, Chen Z, Lu X, Tao L, Subach Fv, Piatkevich Kd miniGFP1, miniGFP2
2022 International Journal of Molecular Sciences Two-Photon Excitation Spectra of Various Fluorescent Proteins within a Broad Excitation Range Leben R, Lindquist Rl, Hauser Ae, Niesner R, Rakhymzhan A Clover, iRFP670, iRFP720, LSSmOrange, mBeRFP, mCerulean3, mKO2, mOrange2, mRuby2, mT-Sapphire, mTurquoise2
2022 Nature Methods Chemically stable fluorescent proteins for advanced microscopy Campbell Bc, Paez-Segala Mg, Looger Ll, Petsko Ga, Liu Cf FOLD6, Hyperfolder YFP, LSSA12, LSSmGFP, Monomeric hyperfolder YFP mGreenLantern,
2023 Nature Methods mScarlet3: a brilliant and fast-maturing red fluorescent protein Gadella Twj, Van Weeren L, Stouthamer J, Hink Ma, Wolters Ahg, Giepmans Bng, Aumonier S, Dupuy J, Royant A mScarlet-220A, mScarlet-2A, mScarlet-2A-84W, mScarlet3, mScarlet-I-220A, mScarlet-I3, mScarlet-I3-NCwt
2023 Biotechnology and Bioengineering High‐efficiency and multilocus targeted integration in CHO cells using CRISPR‐mediated donor nicking and DNA repair inhibitors Hamaker Nk, Lee Kh sfOrange
2023 The Journal of Physical Chemistry B Diverse Fluorescence Resonance Energy Transfer Processes Originating from the Conformational Heterogeneity of the Calcium Indicator Yellow Cameleon YC3.60 Tsubota H, Kinoshita Y, Shigeno M, Hosoi H mEYFP
2023 STAR Protocols Enhanced fluorescent imaging of proteins in live yeast cells using fluorescently labeled scFv Tsirkas I, Zur T, Dovrat D, Paleiov Z, Ravkaie L, Aharoni A Electra1
2023 Journal of Cell Biology A PI(3,5)P2 reporter reveals PIKfyve activity and dynamics on macropinosomes and phagosomes Vines Jh, Maib H, Buckley Cm, Gueho A, Zhu Z, Soldati T, Murray Dh, King Js Alexa Fluor Plus 800
2023 A monochromatically excitable green-red dual-fluorophore fusion incorporating a new large Stokes shift fluorescent protein Ejike Jo, Sadoine M, Shen Y, Ishikawa Y, Sunal E, Hänsch S, Hamacher Ab, Frommer Wb, Wudick Mm, Campball Re, Kleist Tj LSSmApple
2023 ACS Sensors Rational Engineering of an Improved Genetically Encoded pH Sensor Based on Superecliptic pHluorin Shen Y, Wen Y, Sposini S, Vishwanath Aa, Abdelfattah As, Schreiter Er, Lemieux Mj, De Juan-Sanz J, Perrais D, Campbell Re Lime superecliptic pHluorin
2023 Bright and stable monomeric fluorescent proteins derived from StayGold Piatkevich K, Lesnov G, Zhang H, Subach O, Vlaskina A, Samygina V, Nikolaeva A, Gabdulkhakov A, Qin W, Borshchevskiy V, Perfilov M, Mishin A, Subach F mBaoJin-N137K, mBaoJin-S134P, mBaoJin-T55S, mBaoJin-V152E mStayGold, StayGold
2023 Proceedings of the National Academy of Sciences Red fluorescent proteins engineered from green fluorescent proteins Imamura H, Otsubo S, Nishida M, Takekawa N, Imada K AzamiRed1.0, mARs1
2023 StayGold Photostability under Different Illumination Modes Hirano M, Yonemaru Y, Shimozono S, Sugiyama M, Ando R, Okada Y, Fujiwara T, Miyawaki A StayGold
2023 Nature Methods StayGold variants for molecular fusion and membrane-targeting applications Ando R, Shimozono S, Ago H, Takagi M, Sugiyama M, Kurokawa H, Hirano M, Niino Y, Ueno G, Ishidate F, Fujiwara T, Okada Y, Yamamoto M, Miyawaki A mStayGold, mStayGold2, QC2-6, td5oxStayGold, td5StayGold, td8ox2StayGold, td8oxStayGold oxStayGold, tdoxStayGold
2023 Nature Biotechnology A monomeric StayGold fluorescent protein Ivorra-Molla E, Akhuli D, Mcandrew Mbl, Scott W, Kumar L, Palani S, Mishima M, Crow A, Balasubramanian Mk StayGold-E138D StayGold,
2024 Nature Methods Bright and stable monomeric green fluorescent protein derived from StayGold Zhang H, Lesnov Gd, Subach Om, Zhang W, Kuzmicheva Tp, Vlaskina Av, Samygina Vr, Chen L, Ye X, Nikolaeva Ay, Gabdulkhakov A, Papadaki S, Qin W, Borshchevskiy V, Perfilov Mm, Gavrikov As, Drobizhev M, Mishin As, Piatkevich Kd, Subach Fv mBaoJin
2024 A palette of bright and photostable monomeric fluorescent proteins for bacterial time-lapse imaging Fraikin N, Couturier A, Lesterlin C mChartreuse, mJuniper, mLemon, mLychee