Please note: due to the ambiguity of author names, it is extremely hard to be confident about authorships. There may be errors in the names or attributions of these author pages. Please check the actual publication pages for more accurate information.

Dmitriy M Chudakov

  1. Interconversion of Anthozoa GFP-like fluorescent and non-fluorescent proteins by mutagenesis.

    Bulina Me, Chudakov Dm, Mudrik Nn, Lukyanov Ka

    (2002). BMC Biochemistry, 3(1) , 7. doi: 10.1186/1471-2091-3-7. Article   Pubmed

      Primary Proteins:
    1. DsRed-NF

  2. Kindling fluorescent proteins for precise in vivo photolabeling

    Chudakov Dm, Belousov Vv, Zaraisky Ag, Novoselov Vv, Staroverov Db, Zorov Db, Lukyanov S, Lukyanov Ka

    (2003). Nature Biotechnology, 21(2) , 191-194. doi: 10.1038/nbt778. Article   Pubmed

      Primary Proteins:
    1. KFP1

  3. Chromophore Environment Provides Clue to “Kindling Fluorescent Protein” Riddle

    Chudakov Dm, Feofanov Av, Mudrik Nn, Lukyanov S, Lukyanov Ka

    (2003). Journal of Biological Chemistry, 278(9) , 7215-7219. doi: 10.1074/jbc.m211988200. Article

      Primary Proteins:
      Additional Proteins:
    1. asulCP
    2. cgigCP
    3. hcriCP

  4. Common Pathway for the Red Chromophore Formation in Fluorescent Proteins and Chromoproteins

    Verkhusha Vv, Chudakov Dm, Gurskaya Ng, Lukyanov S, Lukyanov Ka

    (2004). Chemistry & Biology, 11(6) , 845-854. doi: 10.1016/j.chembiol.2004.04.007. Article   Pubmed

      Primary Proteins:
      Additional Proteins:
    1. cgigCP

  5. Photoswitchable cyan fluorescent protein for protein tracking

    Chudakov Dm, Verkhusha Vv, Staroverov Db, Souslova Ea, Lukyanov S, Lukyanov Ka

    (2004). Nature Biotechnology, 22(11) , 1435-1439. doi: 10.1038/nbt1025. Article   Pubmed

      Primary Proteins:
    1. PS-CFP

  6. Far-red fluorescent proteins evolved from a blue chromoprotein fromActinia equina

    Shkrob Ma, Yanushevich Yg, Chudakov Dm, Gurskaya Ng, Labas Ya, Poponov Sy, Mudrik Nn, Lukyanov S, Lukyanov Ka

    (2005). Biochemical Journal, 392(3) , 649-654. doi: 10.1042/bj20051314. Article   Pubmed

      Primary Proteins:
    1. aeBlue
    2. AQ14
    3. AQ143
    4. AsRed2

  7. A genetically encoded photosensitizer

    Bulina Me, Chudakov Dm, Britanova Ov, Yanushevich Yg, Staroverov Db, Chepurnykh Tv, Merzlyak Em, Shkrob Ma, Lukyanov S, Lukyanov Ka

    (2005). Nature Biotechnology, 24(1) , 95-99. doi: 10.1038/nbt1175. Article   Pubmed

      Primary Proteins:
    1. KillerRed

  8. Photoswitchable cyan fluorescent protein as a FRET donor

    Souslova Ea, Chudakov Dm

    (2006). Microscopy Research and Technique, 69(3) , 207-209. doi: 10.1002/jemt.20278. Article   Pubmed

      Primary Proteins:
      Additional Proteins:
    1. phiYFP
    2. PS-CFP

  9. Chromophore-assisted light inactivation (CALI) using the phototoxic fluorescent protein KillerRed

    Bulina Me, Lukyanov Ka, Britanova Ov, Onichtchouk D, Lukyanov S, Chudakov Dm

    (2006). Nature Protocols, 1(2) , 947-953. doi: 10.1038/nprot.2006.89. Article   Pubmed

      Primary Proteins:
      Additional Proteins:
    1. KillerRed

  10. Structural basis for the fast maturation of Arthropoda green fluorescent protein

    Evdokimov Ag, Pokross Me, Egorov Ns, Zaraisky Ag, Yampolsky Iv, Merzlyak Em, Shkoporov An, Sander I, Lukyanov Ka, Chudakov Dm

    (2006). EMBO reports, 7(10) , 1006-1012. doi: 10.1038/sj.embor.7400787. Article   Pubmed

      Primary Proteins:
    1. TurboGFP
    2. TurboGFP-V197L

  11. Single fluorescent protein-based Ca2+ sensors with increased dynamic range

    Souslova Ea, Belousov Vv, Lock Jg, Strömblad S, Kasparov S, Bolshakov Ap, Pinelis Vg, Labas Ya, Lukyanov S, Mayr Lm, Chudakov Dm

    (2007). BMC Biotechnology, 7(1) , 37. doi: 10.1186/1472-6750-7-37. Article   Pubmed

      Primary Proteins:
      Additional Proteins:
    1. GCaMP2

  12. Bright monomeric red fluorescent protein with an extended fluorescence lifetime

    Merzlyak Em, Goedhart J, Shcherbo D, Bulina Me, Shcheglov As, Fradkov Af, Gaintzeva A, Lukyanov Ka, Lukyanov S, Gadella Twj, Chudakov Dm

    (2007). Nature Methods, 4(7) , 555-557. doi: 10.1038/nmeth1062. Article   Pubmed

      Primary Proteins:
    1. eqFP578
    2. TagRFP
    3. TurboRFP
      Additional Proteins:
    1. eqFP611
    2. mCherry
    3. TurboFP602

  13. Tracking intracellular protein movements using photoswitchable fluorescent proteins PS-CFP2 and Dendra2

    Chudakov Dm, Lukyanov S, Lukyanov Ka

    (2007). Nature Protocols, 2(8) , 2024-2032. doi: 10.1038/nprot.2007.291. Article   Pubmed

      Primary Proteins:
      Additional Proteins:
    1. Dendra2
    2. PS-CFP2

  14. Bright far-red fluorescent protein for whole-body imaging

    Shcherbo D, Merzlyak Em, Chepurnykh Tv, Fradkov Af, Ermakova Gv, Solovieva Ea, Lukyanov Ka, Bogdanova Ea, Zaraisky Ag, Lukyanov S, Chudakov Dm

    (2007). Nature Methods, 4(9) , 741-746. doi: 10.1038/nmeth1083. Article   Pubmed

      Primary Proteins:
    1. Katushka
    2. mKate

  15. A Crystallographic Study of Bright Far-Red Fluorescent Protein mKate Reveals pH-inducedcis-transIsomerization of the Chromophore

    Pletnev S, Shcherbo D, Chudakov Dm, Pletneva N, Merzlyak Em, Wlodawer A, Dauter Z, Pletnev V

    (2008). Journal of Biological Chemistry, 283(43) , 28980-28987. doi: 10.1074/jbc.m800599200. Article   Pubmed

      Primary Proteins:
    1. mKate S158A
      Additional Proteins:
    1. mKate

  16. Conversion of Red Fluorescent Protein into a Bright Blue Probe

    Subach Om, Gundorov Is, Yoshimura M, Subach Fv, Zhang J, Grüenwald D, Souslova Ea, Chudakov Dm, Verkhusha Vv

    (2008). Chemistry & Biology, 15(10) , 1116-1124. doi: 10.1016/j.chembiol.2008.08.006. Article   Pubmed

      Primary Proteins:
    1. HcRed1-Blue
    2. TagBFP
    3. TagGFP
    4. TagGFP2
      Additional Proteins:
    1. Azurite
    2. EBFP2
    3. HcRed

  17. Far-red fluorescent tags for protein imaging in living tissues

    Shcherbo D, Murphy Cs, Ermakova Gv, Solovieva Ea, Chepurnykh Tv, Shcheglov As, Verkhusha Vv, Pletnev Vz, Hazelwood Kl, Roche Pm, Lukyanov S, Zaraisky Ag, Davidson Mw, Chudakov Dm

    (2009). Biochemical Journal, 418(3) , 567-574. doi: 10.1042/bj20081949. Article   Pubmed

      Primary Proteins:
    1. mKate2
    2. tdKatushka2

  18. Structural Basis for Phototoxicity of the Genetically Encoded Photosensitizer KillerRed

    Pletnev S, Gurskaya Ng, Pletneva Nv, Lukyanov Ka, Chudakov Dm, Martynov Vi, Popov Vo, Kovalchuk Mv, Wlodawer A, Dauter Z, Pletnev V

    (2009). Journal of Biological Chemistry, 284(46) , 32028-32039. doi: 10.1074/jbc.m109.054973. Article   Pubmed

      Primary Proteins:
      Additional Proteins:
    1. KillerRed

  19. Near-infrared fluorescent proteins

    Shcherbo D, Shemiakina Ii, Ryabova Av, Luker Ke, Schmidt Bt, Souslova Ea, Gorodnicheva Tv, Strukova L, Shidlovskiy Km, Britanova Ov, Zaraisky Ag, Lukyanov Ka, Loschenov Vb, Luker Gd, Chudakov Dm

    (2010). Nature Methods, 7(10) , 827-829. doi: 10.1038/nmeth.1501. Article   Pubmed

      Primary Proteins:
    1. eqFP650
    2. eqFP670
    3. Katushka-9-5

  20. Circular Permutation of Red Fluorescent Proteins

    Shui B, Wang Q, Lee F, Byrnes Lj, Chudakov Dm, Lukyanov Sa, Sondermann H, Kotlikoff Mi

    (2011). PLoS ONE, 6(5) , e20505. doi: 10.1371/journal.pone.0020505. Article   Pubmed

      Primary Proteins:
    1. cp-mKate

  21. Crystallographic study of red fluorescent protein eqFP578 and its far-red variant Katushka reveals opposite pH-induced isomerization of chromophore

    Pletneva Nv, Pletnev Vz, Shemiakina Ii, Chudakov Dm, Artemyev I, Wlodawer A, Dauter Z, Pletnev S

    (2011). Protein Science, 20(7) , 1265-1274. doi: 10.1002/pro.654. Article   Pubmed

      Primary Proteins:
      Additional Proteins:
    1. Katushka

  22. A monomeric red fluorescent protein with low cytotoxicity

    Shemiakina Ii, Ermakova Gv, Cranfill Pj, Baird Ma, Evans Ra, Souslova Ea, Staroverov Db, Gorokhovatsky Ay, Putintseva Ev, Gorodnicheva Tv, Chepurnykh Tv, Strukova L, Lukyanov S, Zaraisky Ag, Davidson Mw, Chudakov Dm, Shcherbo D

    (2012). Nature Communications, 3(1) , 1204. doi: 10.1038/ncomms2208. Article   Pubmed

      Primary Proteins:
    1. FusionRed
    2. mKate2.5

  23. Yellow fluorescent protein phiYFPv (Phialidium): structure and structure-based mutagenesis

    Pletneva Nv, Pletnev Vz, Souslova E, Chudakov Dm, Lukyanov S, Martynov Vi, Arhipova S, Artemyev I, Wlodawer A, Dauter Z, Pletnev S

    (2013). Acta Crystallographica Section D Biological Crystallography, 69(6) , 1005-1012. doi: 10.1107/s0907444913004034. Article   Pubmed

      Primary Proteins:
    1. phiYFPv

  24. Structure of the red fluorescent protein from a lancelet (Branchiostoma lanceolatum): a novel GYG chromophore covalently bound to a nearby tyrosine

    Pletnev Vz, Pletneva Nv, Lukyanov Ka, Souslova Ea, Fradkov Af, Chudakov Dm, Chepurnykh T, Yampolsky Iv, Wlodawer A, Dauter Z, Pletnev S

    (2013). Acta Crystallographica Section D Biological Crystallography, 69(9) , 1850-1860. doi: 10.1107/s0907444913015424. Article   Pubmed

      Primary Proteins:
    1. laGFP
    2. lanRFP-ΔS83l
    3. laRFP

  25. Comparative study reveals better far-red fluorescent protein for whole body imaging

    Luker Ke, Pata P, Shemiakina Ii, Pereverzeva A, Stacer Ac, Shcherbo Ds, Pletnev Vz, Skolnaja M, Lukyanov Ka, Luker Gd, Pata I, Chudakov Dm

    (2015). Scientific Reports, 5(1) , 10332. doi: 10.1038/srep10332. Article   Pubmed

      Primary Proteins:
    1. Katushka2S

  26. Fast reversibly photoswitching red fluorescent proteins for live-cell RESOLFT nanoscopy

    Pennacchietti F, Serebrovskaya Eo, Faro Ar, Shemyakina Ii, Bozhanova Ng, Kotlobay Aa, Gurskaya Ng, Bodén A, Dreier J, Chudakov Dm, Lukyanov Ka, Verkhusha Vv, Mishin As, Testa I

    (2018). Nature Methods, 15(8) , 601-604. doi: 10.1038/s41592-018-0052-9. Article   Pubmed

      Primary Proteins:
    1. rsFusionRed1
    2. rsFusionRed2
    3. rsFusionRed3